Hvulgare HORVU2Hr1G091800
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G091800 [ HORVU2Hr1G091800] |
chr2H | 649532894 | 649537574 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G091800.13 HORVU2Hr1G091800.13 |
Low | No | 681 | OG0039445 | Get ORF Coding potential... Type: noncoding Potential: -1.053 Folding energies... MFEI: -44.640 AMFE: -0.686 GC content %: 65.051 | |
| Hvulgare_HORVU2Hr1G091800.16 HORVU2Hr1G091800.16 |
Low | No | 792 | OG0039446 | Get ORF Coding potential... Type: noncoding Potential: -1.002 Folding energies... MFEI: -43.939 AMFE: -0.671 GC content %: 65.530 | |
| Hvulgare_HORVU2Hr1G091800.19 HORVU2Hr1G091800.19 |
High | No | 511 | OG0039447 | Get ORF Coding potential... Type: noncoding Potential: -1.076 Folding energies... MFEI: -38.200 AMFE: -0.618 GC content %: 61.840 | |
| Hvulgare_HORVU2Hr1G091800.21 HORVU2Hr1G091800.21 |
High | No | 774 | OG0039448 | Get ORF Coding potential... Type: noncoding Potential: -0.921 Folding energies... MFEI: -40.814 AMFE: -0.681 GC content %: 59.948 | |
| Hvulgare_HORVU2Hr1G091800.22 HORVU2Hr1G091800.22 |
High | No | 390 | OG0039449 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -20.949 AMFE: -0.524 GC content %: 40.000 | |
| Hvulgare_HORVU2Hr1G091800.4 HORVU2Hr1G091800.4 |
High | No | 339 | OG0039450 | Get ORF Coding potential... Type: noncoding Potential: -0.865 Folding energies... MFEI: -40.796 AMFE: -0.643 GC content %: 63.422 | |
| Hvulgare_HORVU2Hr1G091800.6 HORVU2Hr1G091800.6 |
High | No | 906 | OG0039451 | Get ORF Coding potential... Type: noncoding Potential: -0.890 Folding energies... MFEI: -36.380 AMFE: -0.635 GC content %: 57.285 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G091800.13 | SwissProt | 2021-04-01 | Q5E9Q1 | 9.23e-6 |
| Hvulgare_HORVU2Hr1G091800.16 | SwissProt | 2021-04-01 | Q29AU6 | 1.79e-5 |
| Hvulgare_HORVU2Hr1G091800.13 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
