Hvulgare HORVU2Hr1G092810
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G092810 [ HORVU2Hr1G092810] |
chr2H | 655347877 | 655401933 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G092810.21 HORVU2Hr1G092810.21 |
High | No | 488 | OG0012408 | Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -32.049 AMFE: -0.644 GC content %: 49.795 | |
| Hvulgare_HORVU2Hr1G092810.22 HORVU2Hr1G092810.22 |
High | No | 398 | OG0039470 | Get ORF Coding potential... Type: noncoding Potential: -1.032 Folding energies... MFEI: -34.472 AMFE: -0.647 GC content %: 53.266 | |
| Hvulgare_HORVU2Hr1G092810.23 HORVU2Hr1G092810.23 |
High | No | 443 | OG0012408 | Get ORF Coding potential... Type: noncoding Potential: -1.071 Folding energies... MFEI: -36.275 AMFE: -0.640 GC content %: 56.659 | |
| Hvulgare_HORVU2Hr1G092810.24 HORVU2Hr1G092810.24 |
High | No | 607 | OG0003266 | Get ORF Coding potential... Type: noncoding Potential: -1.145 Folding energies... MFEI: -34.102 AMFE: -0.651 GC content %: 52.389 | |
| Hvulgare_HORVU2Hr1G092810.25 HORVU2Hr1G092810.25 |
High | No | 638 | OG0003266 | Get ORF Coding potential... Type: noncoding Potential: -1.163 Folding energies... MFEI: -32.853 AMFE: -0.635 GC content %: 51.724 | |
| Hvulgare_HORVU2Hr1G092810.26 HORVU2Hr1G092810.26 |
High | No | 635 | OG0003266 | Get ORF Coding potential... Type: noncoding Potential: -1.183 Folding energies... MFEI: -32.787 AMFE: -0.635 GC content %: 51.654 | |
| Hvulgare_HORVU2Hr1G092810.27 HORVU2Hr1G092810.27 |
High | No | 367 | OG0039471 | Get ORF Coding potential... Type: noncoding Potential: -1.126 Folding energies... MFEI: -34.850 AMFE: -0.649 GC content %: 53.678 | |
| Hvulgare_HORVU2Hr1G092810.28 HORVU2Hr1G092810.28 |
High | No | 573 | OG0012409 | Get ORF Coding potential... Type: noncoding Potential: -1.144 Folding energies... MFEI: -34.136 AMFE: -0.650 GC content %: 52.531 | |
| Hvulgare_HORVU2Hr1G092810.29 HORVU2Hr1G092810.29 |
High | No | 574 | OG0003266 | Get ORF Coding potential... Type: noncoding Potential: -1.201 Folding energies... MFEI: -33.397 AMFE: -0.633 GC content %: 52.787 | |
| Hvulgare_HORVU2Hr1G092810.30 HORVU2Hr1G092810.30 |
High | No | 680 | OG0012410 | Get ORF Coding potential... Type: noncoding Potential: -1.063 Folding energies... MFEI: -37.368 AMFE: -0.690 GC content %: 54.118 | |
| Hvulgare_HORVU2Hr1G092810.31 HORVU2Hr1G092810.31 |
High | No | 684 | OG0012410 | Get ORF Coding potential... Type: noncoding Potential: -1.065 Folding energies... MFEI: -37.295 AMFE: -0.689 GC content %: 54.094 | |
| Hvulgare_HORVU2Hr1G092810.32 HORVU2Hr1G092810.32 |
High | No | 461 | OG0012411 | Get ORF Coding potential... Type: noncoding Potential: -1.161 Folding energies... MFEI: -37.939 AMFE: -0.670 GC content %: 56.616 | |
| Hvulgare_HORVU2Hr1G092810.33 HORVU2Hr1G092810.33 |
High | No | 457 | OG0012411 | Get ORF Coding potential... Type: noncoding Potential: -1.181 Folding energies... MFEI: -37.790 AMFE: -0.669 GC content %: 56.455 | |
| Hvulgare_HORVU2Hr1G092810.34 HORVU2Hr1G092810.34 |
High | No | 785 | OG0012409 | Get ORF Coding potential... Type: noncoding Potential: -1.105 Folding energies... MFEI: -33.121 AMFE: -0.647 GC content %: 51.210 | |
| Hvulgare_HORVU2Hr1G092810.35 HORVU2Hr1G092810.35 |
High | No | 678 | OG0039472 | Get ORF Coding potential... Type: noncoding Potential: -1.063 Folding energies... MFEI: -35.074 AMFE: -0.662 GC content %: 52.950 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
