Hvulgare HORVU2Hr1G099020
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G099020 [ HORVU2Hr1G099020] |
chr2H | 686061006 | 686065327 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G099020.10 HORVU2Hr1G099020.10 |
High | No | 2644 | OG0001409 | Get ORF Coding potential... Type: noncoding Potential: -1.010 Folding energies... MFEI: -29.418 AMFE: -0.614 GC content %: 47.920 | |
| Hvulgare_HORVU2Hr1G099020.11 HORVU2Hr1G099020.11 |
High | No | 3008 | OG0012422 | Get ORF Coding potential... Type: noncoding Potential: -0.989 Folding energies... MFEI: -28.398 AMFE: -0.614 GC content %: 46.243 | |
| Hvulgare_HORVU2Hr1G099020.12 HORVU2Hr1G099020.12 |
High | No | 2662 | OG0012423 | Get ORF Coding potential... Type: noncoding Potential: -0.980 Folding energies... MFEI: -22.678 AMFE: -0.577 GC content %: 39.331 | |
| Hvulgare_HORVU2Hr1G099020.13 HORVU2Hr1G099020.13 |
High | No | 2467 | OG0039623 | Get ORF Coding potential... Type: noncoding Potential: -0.973 Folding energies... MFEI: -29.364 AMFE: -0.611 GC content %: 48.075 | |
| Hvulgare_HORVU2Hr1G099020.14 HORVU2Hr1G099020.14 |
High | No | 3041 | OG0012423 | Get ORF Coding potential... Type: noncoding Potential: -0.990 Folding energies... MFEI: -27.872 AMFE: -0.612 GC content %: 45.577 | |
| Hvulgare_HORVU2Hr1G099020.15 HORVU2Hr1G099020.15 |
High | No | 3077 | OG0012424 | Get ORF Coding potential... Type: noncoding Potential: -0.991 Folding energies... MFEI: -28.154 AMFE: -0.617 GC content %: 45.661 | |
| Hvulgare_HORVU2Hr1G099020.17 HORVU2Hr1G099020.17 |
High | No | 2993 | OG0012424 | Get ORF Coding potential... Type: noncoding Potential: -0.989 Folding energies... MFEI: -28.543 AMFE: -0.625 GC content %: 45.673 | |
| Hvulgare_HORVU2Hr1G099020.18 HORVU2Hr1G099020.18 |
High | No | 2805 | OG0001409 | Get ORF Coding potential... Type: noncoding Potential: -0.894 Folding energies... MFEI: -28.108 AMFE: -0.602 GC content %: 46.667 | |
| Hvulgare_HORVU2Hr1G099020.2 HORVU2Hr1G099020.2 |
High | No | 3255 | OG0012425 | Get ORF Coding potential... Type: noncoding Potential: -1.023 Folding energies... MFEI: -27.779 AMFE: -0.611 GC content %: 45.438 | |
| Hvulgare_HORVU2Hr1G099020.20 HORVU2Hr1G099020.20 |
High | No | 3185 | OG0012425 | Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -27.341 AMFE: -0.619 GC content %: 44.176 | |
| Hvulgare_HORVU2Hr1G099020.21 HORVU2Hr1G099020.21 |
High | No | 2000 | OG0001409 | Get ORF Coding potential... Type: noncoding Potential: -0.924 Folding energies... MFEI: -30.495 AMFE: -0.619 GC content %: 49.250 | |
| Hvulgare_HORVU2Hr1G099020.22 HORVU2Hr1G099020.22 |
High | No | 2544 | OG0039624 | Get ORF Coding potential... Type: noncoding Potential: -0.976 Folding energies... MFEI: -27.877 AMFE: -0.608 GC content %: 45.833 | |
| Hvulgare_HORVU2Hr1G099020.25 HORVU2Hr1G099020.25 |
High | No | 1701 | OG0039625 | Get ORF Coding potential... Type: noncoding Potential: -0.927 Folding energies... MFEI: -23.016 AMFE: -0.584 GC content %: 39.389 | |
| Hvulgare_HORVU2Hr1G099020.26 HORVU2Hr1G099020.26 |
High | No | 1639 | OG0001409 | Get ORF Coding potential... Type: noncoding Potential: -1.281 Folding energies... MFEI: -31.641 AMFE: -0.626 GC content %: 50.519 | |
| Hvulgare_HORVU2Hr1G099020.27 HORVU2Hr1G099020.27 |
High | No | 1485 | OG0001409 | Get ORF Coding potential... Type: noncoding Potential: -1.273 Folding energies... MFEI: -33.320 AMFE: -0.644 GC content %: 51.717 | |
| Hvulgare_HORVU2Hr1G099020.3 HORVU2Hr1G099020.3 |
High | No | 2769 | OG0001409 | Get ORF Coding potential... Type: noncoding Potential: -0.983 Folding energies... MFEI: -28.059 AMFE: -0.602 GC content %: 46.587 | |
| Hvulgare_HORVU2Hr1G099020.4 HORVU2Hr1G099020.4 |
High | No | 3599 | OG0012426 | Get ORF Coding potential... Type: noncoding Potential: -1.002 Folding energies... MFEI: -27.294 AMFE: -0.617 GC content %: 44.262 | |
| Hvulgare_HORVU2Hr1G099020.5 HORVU2Hr1G099020.5 |
High | No | 3647 | OG0012426 | Get ORF Coding potential... Type: noncoding Potential: -0.964 Folding energies... MFEI: -27.444 AMFE: -0.620 GC content %: 44.256 | |
| Hvulgare_HORVU2Hr1G099020.6 HORVU2Hr1G099020.6 |
High | No | 3203 | OG0039626 | Get ORF Coding potential... Type: noncoding Potential: -0.875 Folding energies... MFEI: -28.096 AMFE: -0.618 GC content %: 45.426 | |
| Hvulgare_HORVU2Hr1G099020.7 HORVU2Hr1G099020.7 |
High | No | 3863 | OG0039627 | Get ORF Coding potential... Type: noncoding Potential: -1.006 Folding energies... MFEI: -26.576 AMFE: -0.613 GC content %: 43.360 | |
| Hvulgare_HORVU2Hr1G099020.8 HORVU2Hr1G099020.8 |
High | No | 2963 | OG0012422 | Get ORF Coding potential... Type: noncoding Potential: -0.988 Folding energies... MFEI: -28.181 AMFE: -0.612 GC content %: 46.034 | |
| Hvulgare_HORVU2Hr1G099020.9 HORVU2Hr1G099020.9 |
High | No | 2434 | OG0039628 | Get ORF Coding potential... Type: noncoding Potential: -0.972 Folding energies... MFEI: -29.700 AMFE: -0.613 GC content %: 48.480 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
