Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU2Hr1G103450 [ HORVU2Hr1G103450] |
chr2H | 700077318 | 700078651 | r1 | Hordeum vulgare (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU2Hr1G103450.1 HORVU2Hr1G103450.1 |
Low | No | 1334 | OG0039738 | Get ORF Coding potential... Type: noncoding Potential: -1.074 Folding energies... MFEI: -31.027 AMFE: -0.655 GC content %: 47.376 | |
Hvulgare_HORVU2Hr1G103450.2 HORVU2Hr1G103450.2 |
Low | No | 1146 | OG0039739 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -32.949 AMFE: -0.674 GC content %: 48.866 | |
Hvulgare_HORVU2Hr1G103450.3 HORVU2Hr1G103450.3 |
High | No | 572 | OG0039740 | Get ORF Coding potential... Type: noncoding Potential: -1.005 Folding energies... MFEI: -26.469 AMFE: -0.578 GC content %: 45.804 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Hvulgare_HORVU2Hr1G103450.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
Hvulgare_HORVU2Hr1G103450.2 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia |