Hvulgare HORVU2Hr1G103800
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G103800 [ HORVU2Hr1G103800] |
chr2H | 700872726 | 700945483 | r1 | Hordeum vulgare (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G103800.1 HORVU2Hr1G103800.1 |
Low | No | 608 | OG0002126 | Get ORF Coding potential... Type: noncoding Potential: -0.598 Folding energies... MFEI: -32.714 AMFE: -0.688 GC content %: 47.533 | |
| Hvulgare_HORVU2Hr1G103800.2 HORVU2Hr1G103800.2 |
Low | No | 632 | OG0002126 | Get ORF Coding potential... Type: noncoding Potential: -0.230 Folding energies... MFEI: -32.832 AMFE: -0.678 GC content %: 48.418 | |
| Hvulgare_HORVU2Hr1G103800.3 HORVU2Hr1G103800.3 |
Low | No | 673 | OG0002126 | Get ORF Coding potential... Type: noncoding Potential: -0.248 Folding energies... MFEI: -34.606 AMFE: -0.667 GC content %: 51.857 | |
| Hvulgare_HORVU2Hr1G103800.4 HORVU2Hr1G103800.4 |
Low | No | 579 | OG0002126 | Get ORF Coding potential... Type: noncoding Potential: -0.696 Folding energies... MFEI: -28.877 AMFE: -0.663 GC content %: 43.523 | |
| Hvulgare_HORVU2Hr1G103800.5 HORVU2Hr1G103800.5 |
Low | No | 491 | OG0002126 | Get ORF Coding potential... Type: noncoding Potential: -0.651 Folding energies... MFEI: -30.509 AMFE: -0.690 GC content %: 44.196 | |
| Hvulgare_HORVU2Hr1G103800.6 HORVU2Hr1G103800.6 |
High | No | 372 | OG0039749 | Get ORF Coding potential... Type: noncoding Potential: -0.361 Folding energies... MFEI: -31.425 AMFE: -0.582 GC content %: 54.032 | |
| Hvulgare_HORVU2Hr1G103800.7 HORVU2Hr1G103800.7 |
High | No | 257 | OG0039750 | Get ORF Coding potential... Type: noncoding Potential: -0.548 Folding energies... MFEI: -37.082 AMFE: -0.648 GC content %: 57.198 | |
| Hvulgare_HORVU2Hr1G103800.8 HORVU2Hr1G103800.8 |
High | No | 350 | OG0039751 | Get ORF Coding potential... Type: noncoding Potential: -0.804 Folding energies... MFEI: -34.971 AMFE: -0.534 GC content %: 65.429 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G103800.2 | SwissProt | 2021-04-01 | Q14657 | 1.97e-5 |
| Hvulgare_HORVU2Hr1G103800.3 | SwissProt | 2021-04-01 | Q14657 | 1.62e-5 |
| Hvulgare_HORVU2Hr1G103800.4 | SwissProt | 2021-04-01 | Q14657 | 1.16e-5 |
| Hvulgare_HORVU2Hr1G103800.5 | SwissProt | 2021-04-01 | Q14657 | 4.64e-6 |
| Hvulgare_HORVU2Hr1G103800.1 | SwissProt | 2021-04-01 | Q14657 | 9.87e-6 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
