GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Hvulgare_HORVU2Hr1G105890 [ HORVU2Hr1G105890]	chr2H	707703749	707706442	r1	Hordeum vulgare (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Hvulgare_HORVU2Hr1G105890.2 HORVU2Hr1G105890.2	High	No	526	OG0192569		Get ORF Coding potential... Type: noncoding Potential: -0.680 Folding energies... MFEI: -23.479 AMFE: -0.410 GC content %: 57.224
Hvulgare_HORVU2Hr1G105890.3 HORVU2Hr1G105890.3	High	No	796	OG0012435		Get ORF Coding potential... Type: noncoding Potential: -1.085 Folding energies... MFEI: -8.894 AMFE: -0.482 GC content %: 18.467
Hvulgare_HORVU2Hr1G105890.4 HORVU2Hr1G105890.4	High	No	738	OG0012435		Get ORF Coding potential... Type: noncoding Potential: -1.069 Folding energies... MFEI: -22.385 AMFE: -0.582 GC content %: 38.482
Hvulgare_HORVU2Hr1G105890.5 HORVU2Hr1G105890.5	High	No	905	OG0039800		Get ORF Coding potential... Type: noncoding Potential: -1.224 Folding energies... MFEI: -20.641 AMFE: -0.543 GC content %: 38.011

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).