Hvulgare HORVU2Hr1G106920
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G106920 [ HORVU2Hr1G106920] |
chr2H | 710882280 | 710941427 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G106920.1 HORVU2Hr1G106920.1 |
Low | No | 2115 | OG0001071 | Get ORF Coding potential... Type: noncoding Potential: -1.015 Folding energies... MFEI: -27.589 AMFE: -0.702 GC content %: 39.291 | |
| Hvulgare_HORVU2Hr1G106920.12 HORVU2Hr1G106920.12 |
High | No | 929 | OG0039840 | Get ORF Coding potential... Type: noncoding Potential: -1.233 Folding energies... MFEI: -27.879 AMFE: -0.617 GC content %: 45.210 | |
| Hvulgare_HORVU2Hr1G106920.14 HORVU2Hr1G106920.14 |
Low | No | 2845 | OG0001071 | Get ORF Coding potential... Type: noncoding Potential: -1.047 Folding energies... MFEI: -28.745 AMFE: -0.693 GC content %: 41.476 | |
| Hvulgare_HORVU2Hr1G106920.19 HORVU2Hr1G106920.19 |
Low | No | 2861 | OG0001071 | Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -28.591 AMFE: -0.687 GC content %: 41.594 | |
| Hvulgare_HORVU2Hr1G106920.2 HORVU2Hr1G106920.2 |
Low | No | 2025 | OG0001071 | Get ORF Coding potential... Type: noncoding Potential: -1.010 Folding energies... MFEI: -27.719 AMFE: -0.698 GC content %: 39.704 | |
| Hvulgare_HORVU2Hr1G106920.20 HORVU2Hr1G106920.20 |
Low | No | 2734 | OG0001071 | Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -28.731 AMFE: -0.693 GC content %: 41.478 | |
| Hvulgare_HORVU2Hr1G106920.21 HORVU2Hr1G106920.21 |
Low | No | 1998 | OG0001071 | Get ORF Coding potential... Type: noncoding Potential: -1.008 Folding energies... MFEI: -27.107 AMFE: -0.689 GC content %: 39.339 | |
| Hvulgare_HORVU2Hr1G106920.7 HORVU2Hr1G106920.7 |
Low | No | 1852 | OG0001071 | Get ORF Coding potential... Type: noncoding Potential: -0.998 Folding energies... MFEI: -27.873 AMFE: -0.699 GC content %: 39.903 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G106920.19 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1; LTR/Gypsy | |
| Hvulgare_HORVU2Hr1G106920.2 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1; LTR/Gypsy | |
| Hvulgare_HORVU2Hr1G106920.20 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1; LTR/Gypsy | |
| Hvulgare_HORVU2Hr1G106920.21 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1; LTR/Gypsy | |
| Hvulgare_HORVU2Hr1G106920.1 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1; LTR/Gypsy | |
| Hvulgare_HORVU2Hr1G106920.7 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1; LTR/Gypsy | |
| Hvulgare_HORVU2Hr1G106920.14 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1; LTR/Gypsy |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
