Hvulgare HORVU2Hr1G108610
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G108610 [ HORVU2Hr1G108610] |
chr2H | 714773094 | 714775721 | r1 | Hordeum vulgare (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G108610.1 HORVU2Hr1G108610.1 |
Low | No | 1560 | OG0012440 | Get ORF Coding potential... Type: noncoding Potential: -1.131 Folding energies... MFEI: -34.699 AMFE: -0.666 GC content %: 52.115 | |
| Hvulgare_HORVU2Hr1G108610.10 HORVU2Hr1G108610.10 |
Low | No | 2299 | OG0005808 | Get ORF Coding potential... Type: noncoding Potential: -0.927 Folding energies... MFEI: -30.605 AMFE: -0.646 GC content %: 47.368 | |
| Hvulgare_HORVU2Hr1G108610.11 HORVU2Hr1G108610.11 |
Low | No | 2153 | OG0012441 | Get ORF Coding potential... Type: noncoding Potential: -1.216 Folding energies... MFEI: -31.533 AMFE: -0.656 GC content %: 48.072 | |
| Hvulgare_HORVU2Hr1G108610.12 HORVU2Hr1G108610.12 |
Low | No | 1745 | OG0012440 | Get ORF Coding potential... Type: noncoding Potential: -1.140 Folding energies... MFEI: -33.089 AMFE: -0.650 GC content %: 50.888 | |
| Hvulgare_HORVU2Hr1G108610.13 HORVU2Hr1G108610.13 |
Low | No | 2085 | OG0012441 | Get ORF Coding potential... Type: noncoding Potential: -1.214 Folding energies... MFEI: -30.830 AMFE: -0.638 GC content %: 48.345 | |
| Hvulgare_HORVU2Hr1G108610.14 HORVU2Hr1G108610.14 |
Low | No | 2227 | OG0012442 | Get ORF Coding potential... Type: noncoding Potential: -1.219 Folding energies... MFEI: -30.615 AMFE: -0.644 GC content %: 47.508 | |
| Hvulgare_HORVU2Hr1G108610.15 HORVU2Hr1G108610.15 |
Low | No | 1887 | OG0012443 | Get ORF Coding potential... Type: noncoding Potential: -0.884 Folding energies... MFEI: -31.463 AMFE: -0.640 GC content %: 49.126 | |
| Hvulgare_HORVU2Hr1G108610.16 HORVU2Hr1G108610.16 |
Low | No | 1472 | OG0012444 | Get ORF Coding potential... Type: noncoding Potential: -1.127 Folding energies... MFEI: -29.844 AMFE: -0.642 GC content %: 46.467 | |
| Hvulgare_HORVU2Hr1G108610.2 HORVU2Hr1G108610.2 |
Low | No | 1699 | OG0012444 | Get ORF Coding potential... Type: noncoding Potential: -1.138 Folding energies... MFEI: -33.755 AMFE: -0.664 GC content %: 50.853 | |
| Hvulgare_HORVU2Hr1G108610.3 HORVU2Hr1G108610.3 |
High | No | 1437 | OG0039873 | Get ORF Coding potential... Type: noncoding Potential: -0.878 Folding energies... MFEI: -35.846 AMFE: -0.657 GC content %: 54.558 | |
| Hvulgare_HORVU2Hr1G108610.4 HORVU2Hr1G108610.4 |
Low | No | 1982 | OG0005808 | Get ORF Coding potential... Type: noncoding Potential: -0.914 Folding energies... MFEI: -31.327 AMFE: -0.648 GC content %: 48.335 | |
| Hvulgare_HORVU2Hr1G108610.5 HORVU2Hr1G108610.5 |
Low | No | 2056 | OG0012445 | Get ORF Coding potential... Type: noncoding Potential: -0.977 Folding energies... MFEI: -31.099 AMFE: -0.650 GC content %: 47.811 | |
| Hvulgare_HORVU2Hr1G108610.6 HORVU2Hr1G108610.6 |
Low | No | 1776 | OG0012443 | Get ORF Coding potential... Type: noncoding Potential: -0.878 Folding energies... MFEI: -32.607 AMFE: -0.657 GC content %: 49.662 | |
| Hvulgare_HORVU2Hr1G108610.7 HORVU2Hr1G108610.7 |
Low | No | 2204 | OG0012442 | Get ORF Coding potential... Type: noncoding Potential: -1.218 Folding energies... MFEI: -31.053 AMFE: -0.657 GC content %: 47.278 | |
| Hvulgare_HORVU2Hr1G108610.8 HORVU2Hr1G108610.8 |
Low | No | 2340 | OG0012445 | Get ORF Coding potential... Type: noncoding Potential: -0.987 Folding energies... MFEI: -30.970 AMFE: -0.652 GC content %: 47.521 | |
| Hvulgare_HORVU2Hr1G108610.9 HORVU2Hr1G108610.9 |
Low | No | 1910 | OG0005808 | Get ORF Coding potential... Type: noncoding Potential: -0.911 Folding energies... MFEI: -31.529 AMFE: -0.650 GC content %: 48.534 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G108610.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
| Hvulgare_HORVU2Hr1G108610.14 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
| Hvulgare_HORVU2Hr1G108610.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
| Hvulgare_HORVU2Hr1G108610.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
| Hvulgare_HORVU2Hr1G108610.15 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
| Hvulgare_HORVU2Hr1G108610.10 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
| Hvulgare_HORVU2Hr1G108610.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
| Hvulgare_HORVU2Hr1G108610.16 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
| Hvulgare_HORVU2Hr1G108610.11 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
| Hvulgare_HORVU2Hr1G108610.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
