GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Hvulgare_HORVU2Hr1G109710 [ HORVU2Hr1G109710]	chr2H	717723852	717727769	r1	Hordeum vulgare (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Hvulgare_HORVU2Hr1G109710.3 HORVU2Hr1G109710.3	High	No	741	OG0039897		Get ORF Coding potential... Type: noncoding Potential: -0.916 Folding energies... MFEI: -27.490 AMFE: -0.651 GC content %: 42.240
Hvulgare_HORVU2Hr1G109710.5 HORVU2Hr1G109710.5	High	No	383	OG0192579		Get ORF Coding potential... Type: noncoding Potential: -0.704 Folding energies... MFEI: -26.590 AMFE: -0.387 GC content %: 68.668

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).