Hvulgare HORVU2Hr1G114970
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G114970 [ HORVU2Hr1G114970] |
chr2H | 733444516 | 733449246 | r1 | Hordeum vulgare (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G114970.1 HORVU2Hr1G114970.1 |
Low | No | 1694 | OG0040008 | Get ORF Coding potential... Type: noncoding Potential: -1.097 Folding energies... MFEI: -26.488 AMFE: -0.580 GC content %: 45.691 | |
| Hvulgare_HORVU2Hr1G114970.10 HORVU2Hr1G114970.10 |
Low | No | 1461 | OG0040009 | Get ORF Coding potential... Type: noncoding Potential: -1.073 Folding energies... MFEI: -25.592 AMFE: -0.561 GC content %: 45.654 | |
| Hvulgare_HORVU2Hr1G114970.2 HORVU2Hr1G114970.2 |
Low | No | 1771 | OG0040010 | Get ORF Coding potential... Type: noncoding Potential: -1.104 Folding energies... MFEI: -26.251 AMFE: -0.585 GC content %: 44.890 | |
| Hvulgare_HORVU2Hr1G114970.3 HORVU2Hr1G114970.3 |
Low | No | 2064 | OG0012458 | Get ORF Coding potential... Type: noncoding Potential: -1.125 Folding energies... MFEI: -27.670 AMFE: -0.606 GC content %: 45.688 | |
| Hvulgare_HORVU2Hr1G114970.4 HORVU2Hr1G114970.4 |
Low | No | 2546 | OG0040011 | Get ORF Coding potential... Type: noncoding Potential: -1.150 Folding energies... MFEI: -27.329 AMFE: -0.609 GC content %: 44.855 | |
| Hvulgare_HORVU2Hr1G114970.5 HORVU2Hr1G114970.5 |
Low | No | 1672 | OG0040012 | Get ORF Coding potential... Type: noncoding Potential: -1.095 Folding energies... MFEI: -27.033 AMFE: -0.584 GC content %: 46.292 | |
| Hvulgare_HORVU2Hr1G114970.6 HORVU2Hr1G114970.6 |
Low | No | 2372 | OG0040013 | Get ORF Coding potential... Type: noncoding Potential: -1.142 Folding energies... MFEI: -27.057 AMFE: -0.607 GC content %: 44.562 | |
| Hvulgare_HORVU2Hr1G114970.7 HORVU2Hr1G114970.7 |
Low | No | 2280 | OG0012458 | Get ORF Coding potential... Type: noncoding Potential: -1.138 Folding energies... MFEI: -27.680 AMFE: -0.602 GC content %: 45.965 | |
| Hvulgare_HORVU2Hr1G114970.8 HORVU2Hr1G114970.8 |
High | No | 516 | OG0040014 | Get ORF Coding potential... Type: noncoding Potential: -0.820 Folding energies... MFEI: -22.190 AMFE: -0.464 GC content %: 47.868 | |
| Hvulgare_HORVU2Hr1G114970.9 HORVU2Hr1G114970.9 |
High | No | 360 | OG0040015 | Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -23.917 AMFE: -0.456 GC content %: 52.500 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G114970.4 | RepBase (RepeatMasker) | 2014-01-31 | SINE | |
| Hvulgare_HORVU2Hr1G114970.5 | RepBase (RepeatMasker) | 2014-01-31 | SINE | |
| Hvulgare_HORVU2Hr1G114970.1 | RepBase (RepeatMasker) | 2014-01-31 | SINE | |
| Hvulgare_HORVU2Hr1G114970.6 | RepBase (RepeatMasker) | 2014-01-31 | SINE | |
| Hvulgare_HORVU2Hr1G114970.10 | RepBase (RepeatMasker) | 2014-01-31 | SINE | |
| Hvulgare_HORVU2Hr1G114970.7 | RepBase (RepeatMasker) | 2014-01-31 | SINE | |
| Hvulgare_HORVU2Hr1G114970.2 | RepBase (RepeatMasker) | 2014-01-31 | SINE | |
| Hvulgare_HORVU2Hr1G114970.3 | RepBase (RepeatMasker) | 2014-01-31 | SINE |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
