Hvulgare HORVU2Hr1G115640

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Hvulgare_HORVU2Hr1G115640
[ HORVU2Hr1G115640]
chr2H 735220029 735229888 r1 Hordeum vulgare (Phytozome 13)
Coding?
Yes


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Hvulgare_HORVU2Hr1G115640.1
HORVU2Hr1G115640.1
High No 640 OG0040028
Coding potential...
Type: noncoding Potential: -1.163
Folding energies...
MFEI: -33.156 AMFE: -0.575
GC content
%: 57.656
Hvulgare_HORVU2Hr1G115640.20
HORVU2Hr1G115640.20
Low No 1337 OG0040029
Coding potential...
Type: noncoding Potential: -0.377
Folding energies...
MFEI: -31.877 AMFE: -0.703
GC content
%: 45.325


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Hvulgare_HORVU2Hr1G115640.20  SwissProt 2021-04-01 A5JTQ2 3.73e-12
Hvulgare_HORVU2Hr1G115640.20  RepBase (RepeatMasker) 2014-01-31 LINE/L1


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Hvulgare_HORVU2Hr1G115640.png