Hvulgare HORVU2Hr1G116090
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G116090 [ HORVU2Hr1G116090] |
chr2H | 736782549 | 736789937 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G116090.10 HORVU2Hr1G116090.10 |
Low | No | 301 | OG0040042 | Get ORF Coding potential... Type: noncoding Potential: -1.280 Folding energies... MFEI: -33.920 AMFE: -0.608 GC content %: 55.814 | |
| Hvulgare_HORVU2Hr1G116090.11 HORVU2Hr1G116090.11 |
High | No | 532 | OG0040043 | Get ORF Coding potential... Type: noncoding Potential: -1.211 Folding energies... MFEI: -36.109 AMFE: -0.541 GC content %: 66.729 | |
| Hvulgare_HORVU2Hr1G116090.12 HORVU2Hr1G116090.12 |
Low | No | 551 | OG0005810 | Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -33.049 AMFE: -0.648 GC content %: 50.998 | |
| Hvulgare_HORVU2Hr1G116090.13 HORVU2Hr1G116090.13 |
Low | No | 571 | OG0005810 | Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -32.820 AMFE: -0.651 GC content %: 50.438 | |
| Hvulgare_HORVU2Hr1G116090.14 HORVU2Hr1G116090.14 |
Low | No | 345 | OG0040044 | Get ORF Coding potential... Type: noncoding Potential: -1.196 Folding energies... MFEI: -30.696 AMFE: -0.605 GC content %: 50.725 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G116090.10 | SwissProt | 2021-04-01 | A0A0P0 | 1.34e-10 |
| Hvulgare_HORVU2Hr1G116090.12 | SwissProt | 2021-04-01 | A0A0P0 | 2.15e-8 |
| Hvulgare_HORVU2Hr1G116090.13 | SwissProt | 2021-04-01 | A0A0P0 | 2.49e-8 |
| Hvulgare_HORVU2Hr1G116090.14 | SwissProt | 2021-04-01 | A0A0P0 | 3.96e-5 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
