Hvulgare HORVU2Hr1G117560
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G117560 [ HORVU2Hr1G117560] |
chr2H | 740351706 | 740357080 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G117560.11 HORVU2Hr1G117560.11 |
Low | No | 974 | OG0001072 | Get ORF Coding potential... Type: noncoding Potential: -0.822 Folding energies... MFEI: -26.550 AMFE: -0.631 GC content %: 42.094 | |
| Hvulgare_HORVU2Hr1G117560.12 HORVU2Hr1G117560.12 |
Low | No | 903 | OG0001072 | Get ORF Coding potential... Type: noncoding Potential: -0.998 Folding energies... MFEI: -25.858 AMFE: -0.616 GC content %: 41.971 | |
| Hvulgare_HORVU2Hr1G117560.13 HORVU2Hr1G117560.13 |
Low | No | 944 | OG0001072 | Get ORF Coding potential... Type: noncoding Potential: -0.978 Folding energies... MFEI: -25.625 AMFE: -0.606 GC content %: 42.267 | |
| Hvulgare_HORVU2Hr1G117560.15 HORVU2Hr1G117560.15 |
Low | No | 446 | OG0192591 | Get ORF Coding potential... Type: noncoding Potential: -0.904 Folding energies... MFEI: -25.179 AMFE: -0.604 GC content %: 41.704 | |
| Hvulgare_HORVU2Hr1G117560.18 HORVU2Hr1G117560.18 |
High | No | 901 | OG0040065 | Get ORF Coding potential... Type: noncoding Potential: -0.577 Folding energies... MFEI: -22.930 AMFE: -0.609 GC content %: 37.625 | |
| Hvulgare_HORVU2Hr1G117560.2 HORVU2Hr1G117560.2 |
Low | No | 1099 | OG0001072 | Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -27.079 AMFE: -0.633 GC content %: 42.766 | |
| Hvulgare_HORVU2Hr1G117560.3 HORVU2Hr1G117560.3 |
High | No | 726 | OG0001072 | Get ORF Coding potential... Type: noncoding Potential: -1.149 Folding energies... MFEI: -26.157 AMFE: -0.613 GC content %: 42.700 | |
| Hvulgare_HORVU2Hr1G117560.4 HORVU2Hr1G117560.4 |
Low | No | 1337 | OG0040066 | Get ORF Coding potential... Type: noncoding Potential: -1.123 Folding energies... MFEI: -26.642 AMFE: -0.632 GC content %: 42.184 | |
| Hvulgare_HORVU2Hr1G117560.5 HORVU2Hr1G117560.5 |
Low | No | 996 | OG0001072 | Get ORF Coding potential... Type: noncoding Potential: -0.862 Folding energies... MFEI: -26.376 AMFE: -0.621 GC content %: 42.470 | |
| Hvulgare_HORVU2Hr1G117560.8 HORVU2Hr1G117560.8 |
Low | No | 1148 | OG0001072 | Get ORF Coding potential... Type: noncoding Potential: -0.889 Folding energies... MFEI: -25.592 AMFE: -0.625 GC content %: 40.941 | |
| Hvulgare_HORVU2Hr1G117560.9 HORVU2Hr1G117560.9 |
Low | No | 1170 | OG0040067 | Get ORF Coding potential... Type: noncoding Potential: -0.850 Folding energies... MFEI: -25.564 AMFE: -0.624 GC content %: 40.940 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G117560.5 | SwissProt | 2021-04-01 | O05235 | 2.65e-7 |
| Hvulgare_HORVU2Hr1G117560.12 | SwissProt | 2021-04-01 | O05235 | 2.33e-7 |
| Hvulgare_HORVU2Hr1G117560.8 | SwissProt | 2021-04-01 | O05235 | 3.74e-7 |
| Hvulgare_HORVU2Hr1G117560.13 | SwissProt | 2021-04-01 | O05235 | 8.67e-6 |
| Hvulgare_HORVU2Hr1G117560.9 | SwissProt | 2021-04-01 | O05235 | 3.31e-7 |
| Hvulgare_HORVU2Hr1G117560.15 | SwissProt | 2021-04-01 | O05235 | 1.29e-8 |
| Hvulgare_HORVU2Hr1G117560.2 | SwissProt | 2021-04-01 | O05235 | 3.47e-7 |
| Hvulgare_HORVU2Hr1G117560.4 | SwissProt | 2021-04-01 | O05235 | 7.53e-6 |
| Hvulgare_HORVU2Hr1G117560.11 | SwissProt | 2021-04-01 | O05235 | 1.81e-7 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
