GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Hvulgare_HORVU3Hr1G015450 [ HORVU3Hr1G015450]	chr3H	36078213	36079520	r1	Hordeum vulgare (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Hvulgare_HORVU3Hr1G015450.1 HORVU3Hr1G015450.1	High	No	422	OG0003272		Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -23.910 AMFE: -0.540 GC content %: 44.313
Hvulgare_HORVU3Hr1G015450.2 HORVU3Hr1G015450.2	High	No	412	OG0003272		Get ORF Coding potential... Type: noncoding Potential: -0.867 Folding energies... MFEI: -24.612 AMFE: -0.545 GC content %: 45.146
Hvulgare_HORVU3Hr1G015450.3 HORVU3Hr1G015450.3	High	No	391	OG0003272		Get ORF Coding potential... Type: noncoding Potential: -0.957 Folding energies... MFEI: -28.286 AMFE: -0.639 GC content %: 44.246

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).