Hvulgare HORVU3Hr1G020100
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU3Hr1G020100 [ HORVU3Hr1G020100] |
chr3H | 61065898 | 61070706 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU3Hr1G020100.20 HORVU3Hr1G020100.20 |
Low | No | 1492 | OG0001757 | Get ORF Coding potential... Type: noncoding Potential: -0.087 Folding energies... MFEI: -30.570 AMFE: -0.707 GC content %: 43.231 | |
| Hvulgare_HORVU3Hr1G020100.25 HORVU3Hr1G020100.25 |
Low | No | 1104 | OG0001757 | Get ORF Coding potential... Type: noncoding Potential: -0.418 Folding energies... MFEI: -27.355 AMFE: -0.688 GC content %: 39.764 | |
| Hvulgare_HORVU3Hr1G020100.26 HORVU3Hr1G020100.26 |
Low | No | 1450 | OG0001757 | Get ORF Coding potential... Type: noncoding Potential: -0.129 Folding energies... MFEI: -27.207 AMFE: -0.690 GC content %: 39.448 | |
| Hvulgare_HORVU3Hr1G020100.28 HORVU3Hr1G020100.28 |
Low | No | 657 | OG0040576 | Get ORF Coding potential... Type: noncoding Potential: -0.076 Folding energies... MFEI: -27.108 AMFE: -0.657 GC content %: 41.248 | |
| Hvulgare_HORVU3Hr1G020100.29 HORVU3Hr1G020100.29 |
Low | No | 648 | OG0004702 | Get ORF Coding potential... Type: noncoding Potential: -0.236 Folding energies... MFEI: -31.698 AMFE: -0.671 GC content %: 47.222 | |
| Hvulgare_HORVU3Hr1G020100.31 HORVU3Hr1G020100.31 |
Low | No | 1661 | OG0001757 | Get ORF Coding potential... Type: noncoding Potential: -0.224 Folding energies... MFEI: -27.116 AMFE: -0.689 GC content %: 39.374 | |
| Hvulgare_HORVU3Hr1G020100.36 HORVU3Hr1G020100.36 |
Low | No | 1208 | OG0001757 | Get ORF Coding potential... Type: noncoding Potential: -0.316 Folding energies... MFEI: -26.879 AMFE: -0.679 GC content %: 39.570 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU3Hr1G020100.26 | SwissProt | 2021-04-01 | O64511 | 2.06e-13 |
| Hvulgare_HORVU3Hr1G020100.28 | SwissProt | 2021-04-01 | O64511 | 1.77e-11 |
| Hvulgare_HORVU3Hr1G020100.29 | SwissProt | 2021-04-01 | O64511 | 1.92e-6 |
| Hvulgare_HORVU3Hr1G020100.31 | SwissProt | 2021-04-01 | O64511 | 5.11e-9 |
| Hvulgare_HORVU3Hr1G020100.20 | SwissProt | 2021-04-01 | O64511 | 1.82e-10 |
| Hvulgare_HORVU3Hr1G020100.36 | SwissProt | 2021-04-01 | O64511 | 6.76e-9 |
| Hvulgare_HORVU3Hr1G020100.25 | SwissProt | 2021-04-01 | O64511 | 2.88e-6 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
