Hvulgare HORVU3Hr1G021490
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU3Hr1G021490 [ HORVU3Hr1G021490] |
chr3H | 71397672 | 71402512 | r1 | Hordeum vulgare (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU3Hr1G021490.1 HORVU3Hr1G021490.1 |
Low | No | 1227 | OG0012515 | Get ORF Coding potential... Type: noncoding Potential: -0.451 Folding energies... MFEI: -31.459 AMFE: -0.622 GC content %: 50.611 | |
| Hvulgare_HORVU3Hr1G021490.2 HORVU3Hr1G021490.2 |
Low | No | 1193 | OG0012515 | Get ORF Coding potential... Type: noncoding Potential: -0.441 Folding energies... MFEI: -32.205 AMFE: -0.627 GC content %: 51.383 | |
| Hvulgare_HORVU3Hr1G021490.3 HORVU3Hr1G021490.3 |
Low | No | 4835 | OG0012516 | Get ORF Coding potential... Type: noncoding Potential: -1.303 Folding energies... MFEI: -25.266 AMFE: -0.635 GC content %: 39.772 | |
| Hvulgare_HORVU3Hr1G021490.4 HORVU3Hr1G021490.4 |
Low | No | 3441 | OG0005823 | Get ORF Coding potential... Type: noncoding Potential: -1.303 Folding energies... MFEI: -25.949 AMFE: -0.613 GC content %: 42.342 | |
| Hvulgare_HORVU3Hr1G021490.5 HORVU3Hr1G021490.5 |
Low | No | 4609 | OG0012516 | Get ORF Coding potential... Type: noncoding Potential: -1.302 Folding energies... MFEI: -25.465 AMFE: -0.633 GC content %: 40.247 | |
| Hvulgare_HORVU3Hr1G021490.6 HORVU3Hr1G021490.6 |
Low | No | 3185 | OG0005823 | Get ORF Coding potential... Type: noncoding Potential: -1.300 Folding energies... MFEI: -26.308 AMFE: -0.613 GC content %: 42.920 | |
| Hvulgare_HORVU3Hr1G021490.7 HORVU3Hr1G021490.7 |
Low | No | 3248 | OG0005823 | Get ORF Coding potential... Type: noncoding Potential: -1.301 Folding energies... MFEI: -26.219 AMFE: -0.611 GC content %: 42.888 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU3Hr1G021490.1 | SwissProt | 2021-04-01 | Q9ZU34 | 2.63e-11 |
| Hvulgare_HORVU3Hr1G021490.7 | SwissProt | 2021-04-01 | Q9ZU34 | 1.55e-10 |
| Hvulgare_HORVU3Hr1G021490.2 | SwissProt | 2021-04-01 | Q9ZU34 | 2.43e-11 |
| Hvulgare_HORVU3Hr1G021490.3 | SwissProt | 2021-04-01 | Q9ZU34 | 2.56e-10 |
| Hvulgare_HORVU3Hr1G021490.4 | SwissProt | 2021-04-01 | Q9ZU34 | 1.67e-10 |
| Hvulgare_HORVU3Hr1G021490.5 | SwissProt | 2021-04-01 | Q9ZU34 | 2.42e-10 |
| Hvulgare_HORVU3Hr1G021490.6 | SwissProt | 2021-04-01 | Q9ZU34 | 1.51e-10 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
