Hvulgare HORVU3Hr1G029960
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU3Hr1G029960 [ HORVU3Hr1G029960] |
chr3H | 140405657 | 140406147 | r1 | Hordeum vulgare (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU3Hr1G029960.1 HORVU3Hr1G029960.1 |
Low | No | 267 | OG0192643 | Get ORF Coding potential... Type: noncoding Potential: -1.085 Folding energies... MFEI: -39.888 AMFE: -0.543 GC content %: 73.408 | |
| Hvulgare_HORVU3Hr1G029960.2 HORVU3Hr1G029960.2 |
Low | No | 283 | OG0000096 | Get ORF Coding potential... Type: noncoding Potential: -1.070 Folding energies... MFEI: -36.820 AMFE: -0.526 GC content %: 69.965 | |
| Hvulgare_HORVU3Hr1G029960.3 HORVU3Hr1G029960.3 |
Low | No | 281 | OG0192644 | Get ORF Coding potential... Type: noncoding Potential: -0.981 Folding energies... MFEI: -43.060 AMFE: -0.624 GC content %: 69.039 | |
| Hvulgare_HORVU3Hr1G029960.4 HORVU3Hr1G029960.4 |
Low | No | 282 | OG0192645 | Get ORF Coding potential... Type: noncoding Potential: -0.762 Folding energies... MFEI: -43.262 AMFE: -0.646 GC content %: 67.021 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU3Hr1G029960.4 | SwissProt | 2021-04-01 | Q6NNL9 | 3.48e-5 |
| Hvulgare_HORVU3Hr1G029960.1 | SwissProt | 2021-04-01 | Q6NNL9 | 3.12e-5 |
| Hvulgare_HORVU3Hr1G029960.2 | SwissProt | 2021-04-01 | Q6NNL9 | 3.44e-5 |
| Hvulgare_HORVU3Hr1G029960.3 | SwissProt | 2021-04-01 | Q6NNL9 | 3.76e-5 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
