Hvulgare HORVU3Hr1G043160
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU3Hr1G043160 [ HORVU3Hr1G043160] |
chr3H | 278254855 | 278256665 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU3Hr1G043160.10 HORVU3Hr1G043160.10 |
High | No | 216 | OG0041024 | Get ORF Coding potential... Type: noncoding Potential: -1.032 Folding energies... MFEI: -41.481 AMFE: -0.640 GC content %: 64.815 | |
| Hvulgare_HORVU3Hr1G043160.2 HORVU3Hr1G043160.2 |
Low | No | 956 | OG0001414 | Get ORF Coding potential... Type: noncoding Potential: -0.694 Folding energies... MFEI: -34.446 AMFE: -0.692 GC content %: 49.791 | |
| Hvulgare_HORVU3Hr1G043160.3 HORVU3Hr1G043160.3 |
High | No | 922 | OG0001414 | Get ORF Coding potential... Type: noncoding Potential: -0.616 Folding energies... MFEI: -34.349 AMFE: -0.690 GC content %: 49.783 | |
| Hvulgare_HORVU3Hr1G043160.4 HORVU3Hr1G043160.4 |
Low | No | 933 | OG0001414 | Get ORF Coding potential... Type: noncoding Potential: -0.192 Folding energies... MFEI: -34.577 AMFE: -0.694 GC content %: 49.839 | |
| Hvulgare_HORVU3Hr1G043160.6 HORVU3Hr1G043160.6 |
Low | No | 849 | OG0001414 | Get ORF Coding potential... Type: noncoding Potential: -1.094 Folding energies... MFEI: -26.702 AMFE: -0.659 GC content %: 40.518 | |
| Hvulgare_HORVU3Hr1G043160.7 HORVU3Hr1G043160.7 |
Low | No | 799 | OG0001414 | Get ORF Coding potential... Type: noncoding Potential: -0.948 Folding energies... MFEI: -30.814 AMFE: -0.671 GC content %: 45.932 | |
| Hvulgare_HORVU3Hr1G043160.8 HORVU3Hr1G043160.8 |
High | No | 639 | OG0001414 | Get ORF Coding potential... Type: noncoding Potential: -1.004 Folding energies... MFEI: -27.330 AMFE: -0.662 GC content %: 41.315 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU3Hr1G043160.4 | SwissProt | 2021-04-01 | O22773 | 1.48e-10 |
| Hvulgare_HORVU3Hr1G043160.6 | SwissProt | 2021-04-01 | O22773 | 1.81e-4 |
| Hvulgare_HORVU3Hr1G043160.7 | SwissProt | 2021-04-01 | O22773 | 2.13e-9 |
| Hvulgare_HORVU3Hr1G043160.2 | SwissProt | 2021-04-01 | O22773 | 2.56e-7 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
