Hvulgare HORVU3Hr1G062110
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU3Hr1G062110 [ HORVU3Hr1G062110] |
chr3H | 474188174 | 474191020 | r1 | Hordeum vulgare (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU3Hr1G062110.1 HORVU3Hr1G062110.1 |
Low | No | 936 | OG0003282 | Get ORF Coding potential... Type: noncoding Potential: -0.861 Folding energies... MFEI: -29.808 AMFE: -0.547 GC content %: 54.487 | |
| Hvulgare_HORVU3Hr1G062110.2 HORVU3Hr1G062110.2 |
Low | No | 933 | OG0003282 | Get ORF Coding potential... Type: noncoding Potential: -0.861 Folding energies... MFEI: -29.893 AMFE: -0.549 GC content %: 54.448 | |
| Hvulgare_HORVU3Hr1G062110.3 HORVU3Hr1G062110.3 |
Low | No | 1194 | OG0012599 | Get ORF Coding potential... Type: noncoding Potential: -0.325 Folding energies... MFEI: -28.417 AMFE: -0.567 GC content %: 50.084 | |
| Hvulgare_HORVU3Hr1G062110.4 HORVU3Hr1G062110.4 |
Low | No | 1100 | OG0003282 | Get ORF Coding potential... Type: noncoding Potential: -0.879 Folding energies... MFEI: -27.273 AMFE: -0.536 GC content %: 50.909 | |
| Hvulgare_HORVU3Hr1G062110.5 HORVU3Hr1G062110.5 |
Low | No | 1103 | OG0003282 | Get ORF Coding potential... Type: noncoding Potential: -0.880 Folding energies... MFEI: -27.271 AMFE: -0.535 GC content %: 50.952 | |
| Hvulgare_HORVU3Hr1G062110.6 HORVU3Hr1G062110.6 |
Low | No | 1071 | OG0012600 | Get ORF Coding potential... Type: noncoding Potential: -0.876 Folding energies... MFEI: -27.703 AMFE: -0.539 GC content %: 51.354 | |
| Hvulgare_HORVU3Hr1G062110.7 HORVU3Hr1G062110.7 |
Low | No | 926 | OG0012600 | Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -29.255 AMFE: -0.552 GC content %: 53.024 | |
| Hvulgare_HORVU3Hr1G062110.8 HORVU3Hr1G062110.8 |
Low | No | 1048 | OG0012599 | Get ORF Coding potential... Type: noncoding Potential: -0.312 Folding energies... MFEI: -29.628 AMFE: -0.576 GC content %: 51.431 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU3Hr1G062110.6 | SwissProt | 2021-04-01 | Q8N8Q3 | 1.73e-6 |
| Hvulgare_HORVU3Hr1G062110.1 | SwissProt | 2021-04-01 | Q8N8Q3 | 1.61e-7 |
| Hvulgare_HORVU3Hr1G062110.7 | SwissProt | 2021-04-01 | Q8N8Q3 | 1.41e-6 |
| Hvulgare_HORVU3Hr1G062110.2 | SwissProt | 2021-04-01 | Q8N8Q3 | 5.62e-7 |
| Hvulgare_HORVU3Hr1G062110.8 | SwissProt | 2021-04-01 | Q8N8Q3 | 1.94e-9 |
| Hvulgare_HORVU3Hr1G062110.3 | SwissProt | 2021-04-01 | Q8N8Q3 | 2.32e-9 |
| Hvulgare_HORVU3Hr1G062110.4 | SwissProt | 2021-04-01 | Q8N8Q3 | 7.14e-7 |
| Hvulgare_HORVU3Hr1G062110.5 | SwissProt | 2021-04-01 | Q8N8Q3 | 2.04e-7 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
