Hvulgare HORVU3Hr1G063680
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU3Hr1G063680 [ HORVU3Hr1G063680] |
chr3H | 486903528 | 486908477 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU3Hr1G063680.13 HORVU3Hr1G063680.13 |
High | No | 1785 | OG0005852 | Get ORF Coding potential... Type: noncoding Potential: -0.988 Folding energies... MFEI: -27.989 AMFE: -0.636 GC content %: 43.978 | |
| Hvulgare_HORVU3Hr1G063680.14 HORVU3Hr1G063680.14 |
High | No | 1450 | OG0005852 | Get ORF Coding potential... Type: noncoding Potential: -0.960 Folding energies... MFEI: -27.759 AMFE: -0.631 GC content %: 44.000 | |
| Hvulgare_HORVU3Hr1G063680.16 HORVU3Hr1G063680.16 |
High | No | 2896 | OG0041373 | Get ORF Coding potential... Type: noncoding Potential: -1.269 Folding energies... MFEI: -25.269 AMFE: -0.617 GC content %: 40.988 | |
| Hvulgare_HORVU3Hr1G063680.17 HORVU3Hr1G063680.17 |
High | No | 2098 | OG0041374 | Get ORF Coding potential... Type: noncoding Potential: -1.157 Folding energies... MFEI: -26.635 AMFE: -0.620 GC content %: 42.993 | |
| Hvulgare_HORVU3Hr1G063680.18 HORVU3Hr1G063680.18 |
High | No | 1440 | OG0041375 | Get ORF Coding potential... Type: noncoding Potential: -0.993 Folding energies... MFEI: -26.181 AMFE: -0.592 GC content %: 44.236 | |
| Hvulgare_HORVU3Hr1G063680.9 HORVU3Hr1G063680.9 |
High | No | 1065 | OG0005852 | Get ORF Coding potential... Type: noncoding Potential: -0.817 Folding energies... MFEI: -27.146 AMFE: -0.596 GC content %: 45.540 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
