Hvulgare HORVU3Hr1G063790
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU3Hr1G063790 [ HORVU3Hr1G063790] |
chr3H | 487378087 | 487380549 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU3Hr1G063790.1 HORVU3Hr1G063790.1 |
Low | No | 1455 | OG0041393 | Get ORF Coding potential... Type: noncoding Potential: -0.938 Folding energies... MFEI: -23.876 AMFE: -0.603 GC content %: 39.588 | |
| Hvulgare_HORVU3Hr1G063790.10 HORVU3Hr1G063790.10 |
High | No | 389 | OG0041394 | Get ORF Coding potential... Type: noncoding Potential: -0.936 Folding energies... MFEI: -26.607 AMFE: -0.631 GC content %: 42.159 | |
| Hvulgare_HORVU3Hr1G063790.11 HORVU3Hr1G063790.11 |
Low | No | 657 | OG0041395 | Get ORF Coding potential... Type: noncoding Potential: -0.662 Folding energies... MFEI: -27.854 AMFE: -0.663 GC content %: 42.009 | |
| Hvulgare_HORVU3Hr1G063790.12 HORVU3Hr1G063790.12 |
High | No | 876 | OG0041396 | Get ORF Coding potential... Type: noncoding Potential: -1.283 Folding energies... MFEI: -27.226 AMFE: -0.657 GC content %: 41.438 | |
| Hvulgare_HORVU3Hr1G063790.13 HORVU3Hr1G063790.13 |
High | No | 530 | OG0041397 | Get ORF Coding potential... Type: noncoding Potential: -0.890 Folding energies... MFEI: -27.057 AMFE: -0.635 GC content %: 42.642 | |
| Hvulgare_HORVU3Hr1G063790.14 HORVU3Hr1G063790.14 |
High | No | 863 | OG0041398 | Get ORF Coding potential... Type: noncoding Potential: -0.989 Folding energies... MFEI: -26.709 AMFE: -0.644 GC content %: 41.483 | |
| Hvulgare_HORVU3Hr1G063790.2 HORVU3Hr1G063790.2 |
Low | No | 374 | OG0041399 | Get ORF Coding potential... Type: noncoding Potential: -0.882 Folding energies... MFEI: -26.230 AMFE: -0.613 GC content %: 42.781 | |
| Hvulgare_HORVU3Hr1G063790.3 HORVU3Hr1G063790.3 |
High | No | 879 | OG0041400 | Get ORF Coding potential... Type: noncoding Potential: -1.019 Folding energies... MFEI: -26.405 AMFE: -0.654 GC content %: 40.387 | |
| Hvulgare_HORVU3Hr1G063790.5 HORVU3Hr1G063790.5 |
High | No | 581 | OG0012603 | Get ORF Coding potential... Type: noncoding Potential: -1.131 Folding energies... MFEI: -27.022 AMFE: -0.651 GC content %: 41.480 | |
| Hvulgare_HORVU3Hr1G063790.6 HORVU3Hr1G063790.6 |
High | No | 967 | OG0041401 | Get ORF Coding potential... Type: noncoding Potential: -1.045 Folding energies... MFEI: -26.381 AMFE: -0.652 GC content %: 40.434 | |
| Hvulgare_HORVU3Hr1G063790.7 HORVU3Hr1G063790.7 |
High | No | 664 | OG0012603 | Get ORF Coding potential... Type: noncoding Potential: -0.942 Folding energies... MFEI: -26.416 AMFE: -0.642 GC content %: 41.114 | |
| Hvulgare_HORVU3Hr1G063790.8 HORVU3Hr1G063790.8 |
Low | No | 559 | OG0041402 | Get ORF Coding potential... Type: noncoding Potential: -0.905 Folding energies... MFEI: -28.301 AMFE: -0.662 GC content %: 42.755 | |
| Hvulgare_HORVU3Hr1G063790.9 HORVU3Hr1G063790.9 |
High | No | 567 | OG0041403 | Get ORF Coding potential... Type: noncoding Potential: -0.909 Folding energies... MFEI: -27.989 AMFE: -0.661 GC content %: 42.328 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU3Hr1G063790.11 | SwissProt | 2021-04-01 | Q39QC2 | 2.95e-5 |
| Hvulgare_HORVU3Hr1G063790.2 | SwissProt | 2021-04-01 | B1J432 | 2.35e-4 |
| Hvulgare_HORVU3Hr1G063790.8 | SwissProt | 2021-04-01 | Q39QC2 | 7.44e-4 |
| Hvulgare_HORVU3Hr1G063790.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
