Hvulgare HORVU3Hr1G070090
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU3Hr1G070090 [ HORVU3Hr1G070090] |
chr3H | 530419276 | 530428091 | r1 | Hordeum vulgare (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU3Hr1G070090.1 HORVU3Hr1G070090.1 |
Low | No | 1006 | OG0012615 | Get ORF Coding potential... Type: noncoding Potential: -1.073 Folding energies... MFEI: -33.191 AMFE: -0.643 GC content %: 51.590 | |
| Hvulgare_HORVU3Hr1G070090.2 HORVU3Hr1G070090.2 |
Low | No | 1004 | OG0012615 | Get ORF Coding potential... Type: noncoding Potential: -1.072 Folding energies... MFEI: -33.825 AMFE: -0.652 GC content %: 51.892 | |
| Hvulgare_HORVU3Hr1G070090.3 HORVU3Hr1G070090.3 |
Low | No | 863 | OG0041538 | Get ORF Coding potential... Type: noncoding Potential: -1.058 Folding energies... MFEI: -35.353 AMFE: -0.665 GC content %: 53.187 | |
| Hvulgare_HORVU3Hr1G070090.4 HORVU3Hr1G070090.4 |
Low | No | 593 | OG0005854 | Get ORF Coding potential... Type: noncoding Potential: -0.931 Folding energies... MFEI: -40.034 AMFE: -0.690 GC content %: 58.010 | |
| Hvulgare_HORVU3Hr1G070090.5 HORVU3Hr1G070090.5 |
Low | No | 274 | OG0041539 | Get ORF Coding potential... Type: noncoding Potential: -1.126 Folding energies... MFEI: -45.255 AMFE: -0.697 GC content %: 64.964 | |
| Hvulgare_HORVU3Hr1G070090.6 HORVU3Hr1G070090.6 |
Low | No | 304 | OG0005854 | Get ORF Coding potential... Type: noncoding Potential: -0.747 Folding energies... MFEI: -50.197 AMFE: -0.713 GC content %: 70.395 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU3Hr1G070090.3 | SwissProt | 2021-04-01 | Q93ZJ3 | 3.98e-4 |
| Hvulgare_HORVU3Hr1G070090.4 | SwissProt | 2021-04-01 | Q93ZJ3 | 3.02e-4 |
| Hvulgare_HORVU3Hr1G070090.5 | SwissProt | 2021-04-01 | Q93ZJ3 | 5.11e-5 |
| Hvulgare_HORVU3Hr1G070090.6 | SwissProt | 2021-04-01 | Q93ZJ3 | 5.08e-5 |
| Hvulgare_HORVU3Hr1G070090.1 | SwissProt | 2021-04-01 | Q93ZJ3 | 7.07e-4 |
| Hvulgare_HORVU3Hr1G070090.2 | SwissProt | 2021-04-01 | Q93ZJ3 | 7.0e-4 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
