Hvulgare HORVU3Hr1G073930
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU3Hr1G073930 [ HORVU3Hr1G073930] |
chr3H | 556478848 | 556482506 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU3Hr1G073930.10 HORVU3Hr1G073930.10 |
High | No | 1856 | OG0002139 | Get ORF Coding potential... Type: noncoding Potential: -0.992 Folding energies... MFEI: -28.831 AMFE: -0.604 GC content %: 47.737 | |
| Hvulgare_HORVU3Hr1G073930.11 HORVU3Hr1G073930.11 |
High | No | 2078 | OG0041616 | Get ORF Coding potential... Type: noncoding Potential: -1.010 Folding energies... MFEI: -27.069 AMFE: -0.600 GC content %: 45.140 | |
| Hvulgare_HORVU3Hr1G073930.12 HORVU3Hr1G073930.12 |
High | No | 1972 | OG0041617 | Get ORF Coding potential... Type: noncoding Potential: -1.247 Folding energies... MFEI: -28.195 AMFE: -0.608 GC content %: 46.349 | |
| Hvulgare_HORVU3Hr1G073930.13 HORVU3Hr1G073930.13 |
High | No | 2644 | OG0041618 | Get ORF Coding potential... Type: noncoding Potential: -1.268 Folding energies... MFEI: -26.422 AMFE: -0.619 GC content %: 42.663 | |
| Hvulgare_HORVU3Hr1G073930.14 HORVU3Hr1G073930.14 |
High | No | 2836 | OG0041619 | Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -25.247 AMFE: -0.607 GC content %: 41.608 | |
| Hvulgare_HORVU3Hr1G073930.15 HORVU3Hr1G073930.15 |
High | No | 1849 | OG0041620 | Get ORF Coding potential... Type: noncoding Potential: -1.242 Folding energies... MFEI: -28.556 AMFE: -0.614 GC content %: 46.512 | |
| Hvulgare_HORVU3Hr1G073930.16 HORVU3Hr1G073930.16 |
High | No | 1940 | OG0002139 | Get ORF Coding potential... Type: noncoding Potential: -0.999 Folding energies... MFEI: -28.660 AMFE: -0.614 GC content %: 46.701 | |
| Hvulgare_HORVU3Hr1G073930.17 HORVU3Hr1G073930.17 |
High | No | 2952 | OG0003284 | Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -26.270 AMFE: -0.616 GC content %: 42.615 | |
| Hvulgare_HORVU3Hr1G073930.18 HORVU3Hr1G073930.18 |
High | No | 2952 | OG0003284 | Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -26.270 AMFE: -0.616 GC content %: 42.615 | |
| Hvulgare_HORVU3Hr1G073930.19 HORVU3Hr1G073930.19 |
High | No | 3467 | OG0041621 | Get ORF Coding potential... Type: noncoding Potential: -1.155 Folding energies... MFEI: -25.535 AMFE: -0.631 GC content %: 40.438 | |
| Hvulgare_HORVU3Hr1G073930.2 HORVU3Hr1G073930.2 |
High | No | 3034 | OG0003284 | Get ORF Coding potential... Type: noncoding Potential: -1.058 Folding energies... MFEI: -26.114 AMFE: -0.610 GC content %: 42.782 | |
| Hvulgare_HORVU3Hr1G073930.20 HORVU3Hr1G073930.20 |
High | No | 2046 | OG0002139 | Get ORF Coding potential... Type: noncoding Potential: -1.007 Folding energies... MFEI: -28.006 AMFE: -0.601 GC content %: 46.579 | |
| Hvulgare_HORVU3Hr1G073930.21 HORVU3Hr1G073930.21 |
High | No | 2032 | OG0041622 | Get ORF Coding potential... Type: noncoding Potential: -0.925 Folding energies... MFEI: -26.511 AMFE: -0.613 GC content %: 43.258 | |
| Hvulgare_HORVU3Hr1G073930.22 HORVU3Hr1G073930.22 |
High | No | 2598 | OG0041623 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -26.517 AMFE: -0.615 GC content %: 43.110 | |
| Hvulgare_HORVU3Hr1G073930.23 HORVU3Hr1G073930.23 |
High | No | 2029 | OG0041624 | Get ORF Coding potential... Type: noncoding Potential: -1.249 Folding energies... MFEI: -24.189 AMFE: -0.646 GC content %: 37.457 | |
| Hvulgare_HORVU3Hr1G073930.3 HORVU3Hr1G073930.3 |
High | No | 1247 | OG0041625 | Get ORF Coding potential... Type: noncoding Potential: -0.915 Folding energies... MFEI: -30.345 AMFE: -0.567 GC content %: 53.488 | |
| Hvulgare_HORVU3Hr1G073930.4 HORVU3Hr1G073930.4 |
High | No | 3653 | OG0041626 | Get ORF Coding potential... Type: noncoding Potential: -1.077 Folding energies... MFEI: -25.248 AMFE: -0.619 GC content %: 40.761 | |
| Hvulgare_HORVU3Hr1G073930.5 HORVU3Hr1G073930.5 |
High | No | 2093 | OG0002139 | Get ORF Coding potential... Type: noncoding Potential: -1.011 Folding energies... MFEI: -27.735 AMFE: -0.594 GC content %: 46.727 | |
| Hvulgare_HORVU3Hr1G073930.6 HORVU3Hr1G073930.6 |
High | No | 1889 | OG0041627 | Get ORF Coding potential... Type: noncoding Potential: -0.917 Folding energies... MFEI: -28.110 AMFE: -0.606 GC content %: 46.374 | |
| Hvulgare_HORVU3Hr1G073930.7 HORVU3Hr1G073930.7 |
High | No | 2878 | OG0003284 | Get ORF Coding potential... Type: noncoding Potential: -1.052 Folding energies... MFEI: -26.379 AMFE: -0.617 GC content %: 42.738 | |
| Hvulgare_HORVU3Hr1G073930.9 HORVU3Hr1G073930.9 |
High | No | 1866 | OG0002139 | Get ORF Coding potential... Type: noncoding Potential: -0.993 Folding energies... MFEI: -28.789 AMFE: -0.604 GC content %: 47.696 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
