Hvulgare HORVU3Hr1G085320
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU3Hr1G085320 [ HORVU3Hr1G085320] |
chr3H | 612001045 | 612007393 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU3Hr1G085320.1 HORVU3Hr1G085320.1 |
High | No | 1455 | OG0041858 | Get ORF Coding potential... Type: noncoding Potential: -0.897 Folding energies... MFEI: -31.869 AMFE: -0.683 GC content %: 46.667 | |
| Hvulgare_HORVU3Hr1G085320.10 HORVU3Hr1G085320.10 |
High | No | 3503 | OG0001417 | Get ORF Coding potential... Type: noncoding Potential: -0.977 Folding energies... MFEI: -33.374 AMFE: -0.703 GC content %: 47.502 | |
| Hvulgare_HORVU3Hr1G085320.11 HORVU3Hr1G085320.11 |
High | No | 2268 | OG0041859 | Get ORF Coding potential... Type: noncoding Potential: -1.105 Folding energies... MFEI: -34.065 AMFE: -0.709 GC content %: 48.016 | |
| Hvulgare_HORVU3Hr1G085320.12 HORVU3Hr1G085320.12 |
High | No | 3472 | OG0012640 | Get ORF Coding potential... Type: noncoding Potential: -1.155 Folding energies... MFEI: -32.169 AMFE: -0.695 GC content %: 46.313 | |
| Hvulgare_HORVU3Hr1G085320.14 HORVU3Hr1G085320.14 |
High | No | 2826 | OG0041860 | Get ORF Coding potential... Type: noncoding Potential: -0.984 Folding energies... MFEI: -32.523 AMFE: -0.698 GC content %: 46.568 | |
| Hvulgare_HORVU3Hr1G085320.15 HORVU3Hr1G085320.15 |
High | No | 3545 | OG0041861 | Get ORF Coding potential... Type: noncoding Potential: -1.005 Folding energies... MFEI: -31.946 AMFE: -0.690 GC content %: 46.291 | |
| Hvulgare_HORVU3Hr1G085320.16 HORVU3Hr1G085320.16 |
High | No | 2300 | OG0041862 | Get ORF Coding potential... Type: noncoding Potential: -0.946 Folding energies... MFEI: -34.065 AMFE: -0.702 GC content %: 48.522 | |
| Hvulgare_HORVU3Hr1G085320.17 HORVU3Hr1G085320.17 |
High | No | 2680 | OG0012641 | Get ORF Coding potential... Type: noncoding Potential: -0.979 Folding energies... MFEI: -32.851 AMFE: -0.702 GC content %: 46.828 | |
| Hvulgare_HORVU3Hr1G085320.19 HORVU3Hr1G085320.19 |
High | No | 3311 | OG0041863 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -32.229 AMFE: -0.699 GC content %: 46.089 | |
| Hvulgare_HORVU3Hr1G085320.2 HORVU3Hr1G085320.2 |
High | No | 3319 | OG0041864 | Get ORF Coding potential... Type: noncoding Potential: -0.999 Folding energies... MFEI: -30.307 AMFE: -0.685 GC content %: 44.260 | |
| Hvulgare_HORVU3Hr1G085320.20 HORVU3Hr1G085320.20 |
High | No | 2535 | OG0005865 | Get ORF Coding potential... Type: noncoding Potential: -0.973 Folding energies... MFEI: -33.862 AMFE: -0.709 GC content %: 47.732 | |
| Hvulgare_HORVU3Hr1G085320.21 HORVU3Hr1G085320.21 |
High | No | 3502 | OG0001417 | Get ORF Coding potential... Type: noncoding Potential: -0.977 Folding energies... MFEI: -32.247 AMFE: -0.697 GC content %: 46.259 | |
| Hvulgare_HORVU3Hr1G085320.22 HORVU3Hr1G085320.22 |
High | No | 2352 | OG0041865 | Get ORF Coding potential... Type: noncoding Potential: -0.948 Folding energies... MFEI: -34.715 AMFE: -0.711 GC content %: 48.852 | |
| Hvulgare_HORVU3Hr1G085320.23 HORVU3Hr1G085320.23 |
High | No | 3582 | OG0041866 | Get ORF Coding potential... Type: noncoding Potential: -1.158 Folding energies... MFEI: -32.133 AMFE: -0.701 GC content %: 45.840 | |
| Hvulgare_HORVU3Hr1G085320.24 HORVU3Hr1G085320.24 |
High | No | 3341 | OG0003286 | Get ORF Coding potential... Type: noncoding Potential: -0.974 Folding energies... MFEI: -32.601 AMFE: -0.702 GC content %: 46.453 | |
| Hvulgare_HORVU3Hr1G085320.25 HORVU3Hr1G085320.25 |
High | No | 3393 | OG0041867 | Get ORF Coding potential... Type: noncoding Potential: -1.153 Folding energies... MFEI: -32.762 AMFE: -0.706 GC content %: 46.419 | |
| Hvulgare_HORVU3Hr1G085320.26 HORVU3Hr1G085320.26 |
High | No | 3511 | OG0001417 | Get ORF Coding potential... Type: noncoding Potential: -0.978 Folding energies... MFEI: -32.609 AMFE: -0.700 GC content %: 46.568 | |
| Hvulgare_HORVU3Hr1G085320.27 HORVU3Hr1G085320.27 |
High | No | 3437 | OG0041868 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -31.929 AMFE: -0.692 GC content %: 46.145 | |
| Hvulgare_HORVU3Hr1G085320.28 HORVU3Hr1G085320.28 |
High | No | 2672 | OG0041869 | Get ORF Coding potential... Type: noncoding Potential: -1.126 Folding energies... MFEI: -32.919 AMFE: -0.700 GC content %: 47.043 | |
| Hvulgare_HORVU3Hr1G085320.3 HORVU3Hr1G085320.3 |
High | No | 2531 | OG0041870 | Get ORF Coding potential... Type: noncoding Potential: -0.954 Folding energies... MFEI: -31.731 AMFE: -0.692 GC content %: 45.832 | |
| Hvulgare_HORVU3Hr1G085320.31 HORVU3Hr1G085320.31 |
High | No | 3532 | OG0012642 | Get ORF Coding potential... Type: noncoding Potential: -1.157 Folding energies... MFEI: -32.296 AMFE: -0.702 GC content %: 45.980 | |
| Hvulgare_HORVU3Hr1G085320.32 HORVU3Hr1G085320.32 |
High | No | 3454 | OG0041871 | Get ORF Coding potential... Type: noncoding Potential: -1.155 Folding energies... MFEI: -32.299 AMFE: -0.699 GC content %: 46.178 | |
| Hvulgare_HORVU3Hr1G085320.34 HORVU3Hr1G085320.34 |
High | No | 2778 | OG0041872 | Get ORF Coding potential... Type: noncoding Potential: -0.962 Folding energies... MFEI: -30.824 AMFE: -0.686 GC content %: 44.924 | |
| Hvulgare_HORVU3Hr1G085320.35 HORVU3Hr1G085320.35 |
High | No | 2735 | OG0012641 | Get ORF Coding potential... Type: noncoding Potential: -1.129 Folding energies... MFEI: -32.750 AMFE: -0.704 GC content %: 46.508 | |
| Hvulgare_HORVU3Hr1G085320.36 HORVU3Hr1G085320.36 |
High | No | 3169 | OG0012643 | Get ORF Coding potential... Type: noncoding Potential: -0.971 Folding energies... MFEI: -32.581 AMFE: -0.698 GC content %: 46.702 | |
| Hvulgare_HORVU3Hr1G085320.38 HORVU3Hr1G085320.38 |
High | No | 2386 | OG0041873 | Get ORF Coding potential... Type: noncoding Potential: -0.949 Folding energies... MFEI: -33.378 AMFE: -0.702 GC content %: 47.569 | |
| Hvulgare_HORVU3Hr1G085320.39 HORVU3Hr1G085320.39 |
High | No | 3527 | OG0012642 | Get ORF Coding potential... Type: noncoding Potential: -1.157 Folding energies... MFEI: -32.203 AMFE: -0.701 GC content %: 45.960 | |
| Hvulgare_HORVU3Hr1G085320.40 HORVU3Hr1G085320.40 |
High | No | 2539 | OG0041874 | Get ORF Coding potential... Type: noncoding Potential: -0.973 Folding energies... MFEI: -33.430 AMFE: -0.707 GC content %: 47.263 | |
| Hvulgare_HORVU3Hr1G085320.42 HORVU3Hr1G085320.42 |
High | No | 2501 | OG0005865 | Get ORF Coding potential... Type: noncoding Potential: -0.953 Folding energies... MFEI: -33.914 AMFE: -0.710 GC content %: 47.741 | |
| Hvulgare_HORVU3Hr1G085320.43 HORVU3Hr1G085320.43 |
High | No | 3700 | OG0012640 | Get ORF Coding potential... Type: noncoding Potential: -1.161 Folding energies... MFEI: -31.941 AMFE: -0.697 GC content %: 45.811 | |
| Hvulgare_HORVU3Hr1G085320.44 HORVU3Hr1G085320.44 |
High | No | 3118 | OG0012643 | Get ORF Coding potential... Type: noncoding Potential: -0.970 Folding energies... MFEI: -32.947 AMFE: -0.701 GC content %: 47.017 | |
| Hvulgare_HORVU3Hr1G085320.46 HORVU3Hr1G085320.46 |
High | No | 2761 | OG0041875 | Get ORF Coding potential... Type: noncoding Potential: -1.281 Folding energies... MFEI: -32.398 AMFE: -0.702 GC content %: 46.179 | |
| Hvulgare_HORVU3Hr1G085320.47 HORVU3Hr1G085320.47 |
High | No | 2309 | OG0041876 | Get ORF Coding potential... Type: noncoding Potential: -1.108 Folding energies... MFEI: -32.209 AMFE: -0.700 GC content %: 46.037 | |
| Hvulgare_HORVU3Hr1G085320.48 HORVU3Hr1G085320.48 |
High | No | 2433 | OG0041877 | Get ORF Coding potential... Type: noncoding Potential: -1.114 Folding energies... MFEI: -31.541 AMFE: -0.691 GC content %: 45.664 | |
| Hvulgare_HORVU3Hr1G085320.49 HORVU3Hr1G085320.49 |
High | No | 1972 | OG0041878 | Get ORF Coding potential... Type: noncoding Potential: -0.932 Folding energies... MFEI: -32.987 AMFE: -0.697 GC content %: 47.312 | |
| Hvulgare_HORVU3Hr1G085320.5 HORVU3Hr1G085320.5 |
High | No | 3354 | OG0041879 | Get ORF Coding potential... Type: noncoding Potential: -0.975 Folding energies... MFEI: -32.534 AMFE: -0.695 GC content %: 46.780 | |
| Hvulgare_HORVU3Hr1G085320.50 HORVU3Hr1G085320.50 |
High | No | 3292 | OG0001417 | Get ORF Coding potential... Type: noncoding Potential: -0.973 Folding energies... MFEI: -32.546 AMFE: -0.698 GC content %: 46.659 | |
| Hvulgare_HORVU3Hr1G085320.51 HORVU3Hr1G085320.51 |
High | No | 2588 | OG0041880 | Get ORF Coding potential... Type: noncoding Potential: -0.956 Folding energies... MFEI: -33.435 AMFE: -0.706 GC content %: 47.334 | |
| Hvulgare_HORVU3Hr1G085320.52 HORVU3Hr1G085320.52 |
High | No | 3596 | OG0041881 | Get ORF Coding potential... Type: noncoding Potential: -1.159 Folding energies... MFEI: -31.902 AMFE: -0.697 GC content %: 45.745 | |
| Hvulgare_HORVU3Hr1G085320.53 HORVU3Hr1G085320.53 |
High | No | 3340 | OG0001417 | Get ORF Coding potential... Type: noncoding Potential: -0.974 Folding energies... MFEI: -32.635 AMFE: -0.701 GC content %: 46.587 | |
| Hvulgare_HORVU3Hr1G085320.54 HORVU3Hr1G085320.54 |
High | No | 2517 | OG0041882 | Get ORF Coding potential... Type: noncoding Potential: -1.119 Folding energies... MFEI: -33.059 AMFE: -0.706 GC content %: 46.802 | |
| Hvulgare_HORVU3Hr1G085320.55 HORVU3Hr1G085320.55 |
High | No | 3172 | OG0003286 | Get ORF Coding potential... Type: noncoding Potential: -0.971 Folding energies... MFEI: -32.453 AMFE: -0.697 GC content %: 46.564 | |
| Hvulgare_HORVU3Hr1G085320.57 HORVU3Hr1G085320.57 |
High | No | 2620 | OG0041883 | Get ORF Coding potential... Type: noncoding Potential: -1.124 Folding energies... MFEI: -33.340 AMFE: -0.708 GC content %: 47.099 | |
| Hvulgare_HORVU3Hr1G085320.58 HORVU3Hr1G085320.58 |
High | No | 2952 | OG0003286 | Get ORF Coding potential... Type: noncoding Potential: -0.966 Folding energies... MFEI: -32.907 AMFE: -0.696 GC content %: 47.256 | |
| Hvulgare_HORVU3Hr1G085320.59 HORVU3Hr1G085320.59 |
High | No | 2850 | OG0041884 | Get ORF Coding potential... Type: noncoding Potential: -0.963 Folding energies... MFEI: -33.884 AMFE: -0.706 GC content %: 48.000 | |
| Hvulgare_HORVU3Hr1G085320.6 HORVU3Hr1G085320.6 |
High | No | 3177 | OG0041885 | Get ORF Coding potential... Type: noncoding Potential: -0.971 Folding energies... MFEI: -32.131 AMFE: -0.692 GC content %: 46.427 | |
| Hvulgare_HORVU3Hr1G085320.61 HORVU3Hr1G085320.61 |
High | No | 2612 | OG0041886 | Get ORF Coding potential... Type: noncoding Potential: -1.124 Folding energies... MFEI: -33.530 AMFE: -0.702 GC content %: 47.741 | |
| Hvulgare_HORVU3Hr1G085320.62 HORVU3Hr1G085320.62 |
High | No | 2580 | OG0041887 | Get ORF Coding potential... Type: noncoding Potential: -0.956 Folding energies... MFEI: -33.566 AMFE: -0.701 GC content %: 47.907 | |
| Hvulgare_HORVU3Hr1G085320.63 HORVU3Hr1G085320.63 |
High | No | 2204 | OG0012644 | Get ORF Coding potential... Type: noncoding Potential: -0.943 Folding energies... MFEI: -34.764 AMFE: -0.706 GC content %: 49.274 | |
| Hvulgare_HORVU3Hr1G085320.65 HORVU3Hr1G085320.65 |
High | No | 1668 | OG0041888 | Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -31.499 AMFE: -0.680 GC content %: 46.343 | |
| Hvulgare_HORVU3Hr1G085320.66 HORVU3Hr1G085320.66 |
High | No | 2548 | OG0012645 | Get ORF Coding potential... Type: noncoding Potential: -0.955 Folding energies... MFEI: -33.622 AMFE: -0.700 GC content %: 48.038 | |
| Hvulgare_HORVU3Hr1G085320.67 HORVU3Hr1G085320.67 |
High | No | 1787 | OG0041889 | Get ORF Coding potential... Type: noncoding Potential: -1.018 Folding energies... MFEI: -31.276 AMFE: -0.689 GC content %: 45.383 | |
| Hvulgare_HORVU3Hr1G085320.68 HORVU3Hr1G085320.68 |
High | No | 2651 | OG0012645 | Get ORF Coding potential... Type: noncoding Potential: -0.958 Folding energies... MFEI: -34.742 AMFE: -0.708 GC content %: 49.076 | |
| Hvulgare_HORVU3Hr1G085320.71 HORVU3Hr1G085320.71 |
High | No | 2226 | OG0005865 | Get ORF Coding potential... Type: noncoding Potential: -0.943 Folding energies... MFEI: -33.643 AMFE: -0.697 GC content %: 48.293 | |
| Hvulgare_HORVU3Hr1G085320.72 HORVU3Hr1G085320.72 |
High | No | 1830 | OG0012644 | Get ORF Coding potential... Type: noncoding Potential: -0.925 Folding energies... MFEI: -34.885 AMFE: -0.706 GC content %: 49.399 | |
| Hvulgare_HORVU3Hr1G085320.73 HORVU3Hr1G085320.73 |
High | No | 2267 | OG0041890 | Get ORF Coding potential... Type: noncoding Potential: -0.945 Folding energies... MFEI: -32.850 AMFE: -0.691 GC content %: 47.508 | |
| Hvulgare_HORVU3Hr1G085320.74 HORVU3Hr1G085320.74 |
High | No | 1565 | OG0041891 | Get ORF Coding potential... Type: noncoding Potential: -1.015 Folding energies... MFEI: -30.748 AMFE: -0.675 GC content %: 45.559 | |
| Hvulgare_HORVU3Hr1G085320.75 HORVU3Hr1G085320.75 |
High | No | 2572 | OG0041892 | Get ORF Coding potential... Type: noncoding Potential: -0.956 Folding energies... MFEI: -31.987 AMFE: -0.696 GC content %: 45.956 | |
| Hvulgare_HORVU3Hr1G085320.76 HORVU3Hr1G085320.76 |
High | No | 2483 | OG0003286 | Get ORF Coding potential... Type: noncoding Potential: -0.953 Folding energies... MFEI: -31.704 AMFE: -0.698 GC content %: 45.389 | |
| Hvulgare_HORVU3Hr1G085320.77 HORVU3Hr1G085320.77 |
High | No | 2956 | OG0041893 | Get ORF Coding potential... Type: noncoding Potential: -1.285 Folding energies... MFEI: -31.326 AMFE: -0.705 GC content %: 44.452 | |
| Hvulgare_HORVU3Hr1G085320.78 HORVU3Hr1G085320.78 |
High | No | 2105 | OG0041894 | Get ORF Coding potential... Type: noncoding Potential: -1.263 Folding energies... MFEI: -32.238 AMFE: -0.708 GC content %: 45.558 | |
| Hvulgare_HORVU3Hr1G085320.79 HORVU3Hr1G085320.79 |
High | No | 2673 | OG0041895 | Get ORF Coding potential... Type: noncoding Potential: -1.279 Folding energies... MFEI: -30.243 AMFE: -0.689 GC content %: 43.921 | |
| Hvulgare_HORVU3Hr1G085320.8 HORVU3Hr1G085320.8 |
High | No | 2694 | OG0041896 | Get ORF Coding potential... Type: noncoding Potential: -1.127 Folding energies... MFEI: -34.180 AMFE: -0.712 GC content %: 47.996 | |
| Hvulgare_HORVU3Hr1G085320.80 HORVU3Hr1G085320.80 |
High | No | 1672 | OG0041897 | Get ORF Coding potential... Type: noncoding Potential: -1.211 Folding energies... MFEI: -32.392 AMFE: -0.713 GC content %: 45.455 | |
| Hvulgare_HORVU3Hr1G085320.9 HORVU3Hr1G085320.9 |
High | No | 3580 | OG0001417 | Get ORF Coding potential... Type: noncoding Potential: -0.979 Folding energies... MFEI: -33.196 AMFE: -0.703 GC content %: 47.207 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
