Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU3Hr1G092870 [ HORVU3Hr1G092870] |
chr3H | 640428108 | 640437497 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU3Hr1G092870.11 HORVU3Hr1G092870.11 |
Low | No | 613 | OG0042046 | Get ORF Coding potential... Type: noncoding Potential: -0.102 Folding energies... MFEI: -31.387 AMFE: -0.605 GC content %: 51.876 | |
Hvulgare_HORVU3Hr1G092870.2 HORVU3Hr1G092870.2 |
Low | No | 310 | OG0042047 | Get ORF Coding potential... Type: noncoding Potential: -0.069 Folding energies... MFEI: -38.065 AMFE: -0.634 GC content %: 60.000 | |
Hvulgare_HORVU3Hr1G092870.5 HORVU3Hr1G092870.5 |
Low | No | 659 | OG0012658 | Get ORF Coding potential... Type: noncoding Potential: -0.116 Folding energies... MFEI: -30.516 AMFE: -0.600 GC content %: 50.835 | |
Hvulgare_HORVU3Hr1G092870.8 HORVU3Hr1G092870.8 |
Low | No | 656 | OG0012658 | Get ORF Coding potential... Type: noncoding Potential: -0.124 Folding energies... MFEI: -30.625 AMFE: -0.603 GC content %: 50.762 | |
Hvulgare_HORVU3Hr1G092870.9 HORVU3Hr1G092870.9 |
Low | No | 614 | OG0042048 | Get ORF Coding potential... Type: noncoding Potential: -0.030 Folding energies... MFEI: -27.182 AMFE: -0.568 GC content %: 47.883 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Hvulgare_HORVU3Hr1G092870.2 | SwissProt | 2021-04-01 | Q8RX77 | 4.51e-24 |
Hvulgare_HORVU3Hr1G092870.5 | SwissProt | 2021-04-01 | Q8RX77 | 1.03e-17 |
Hvulgare_HORVU3Hr1G092870.8 | SwissProt | 2021-04-01 | Q8RX77 | 1.0e-17 |
Hvulgare_HORVU3Hr1G092870.9 | SwissProt | 2021-04-01 | Q8RX77 | 3.69e-18 |
Hvulgare_HORVU3Hr1G092870.11 | SwissProt | 2021-04-01 | Q8RX77 | 3.69e-18 |