Hvulgare HORVU3Hr1G093140
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU3Hr1G093140 [ HORVU3Hr1G093140] |
chr3H | 640920180 | 641013094 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU3Hr1G093140.1 HORVU3Hr1G093140.1 |
Low | No | 652 | OG0042053 | Get ORF Coding potential... Type: noncoding Potential: -1.041 Folding energies... MFEI: -25.997 AMFE: -0.593 GC content %: 43.865 | |
| Hvulgare_HORVU3Hr1G093140.12 HORVU3Hr1G093140.12 |
Low | No | 751 | OG0042054 | Get ORF Coding potential... Type: noncoding Potential: -1.028 Folding energies... MFEI: -28.256 AMFE: -0.649 GC content %: 43.542 | |
| Hvulgare_HORVU3Hr1G093140.29 HORVU3Hr1G093140.29 |
Low | No | 1125 | OG0012660 | Get ORF Coding potential... Type: noncoding Potential: -0.805 Folding energies... MFEI: -28.729 AMFE: -0.630 GC content %: 45.600 | |
| Hvulgare_HORVU3Hr1G093140.5 HORVU3Hr1G093140.5 |
Low | No | 1367 | OG0012660 | Get ORF Coding potential... Type: noncoding Potential: -0.577 Folding energies... MFEI: -27.257 AMFE: -0.635 GC content %: 42.941 | |
| Hvulgare_HORVU3Hr1G093140.6 HORVU3Hr1G093140.6 |
Low | No | 692 | OG0042055 | Get ORF Coding potential... Type: noncoding Potential: -1.149 Folding energies... MFEI: -27.254 AMFE: -0.639 GC content %: 42.630 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU3Hr1G093140.29 | SwissProt | 2021-04-01 | Q9FPR3 | 2.38e-5 |
| Hvulgare_HORVU3Hr1G093140.5 | SwissProt | 2021-04-01 | Q9FPR3 | 3.86e-5 |
| Hvulgare_HORVU3Hr1G093140.6 | SwissProt | 2021-04-01 | Q05609 | 1.1e-4 |
| Hvulgare_HORVU3Hr1G093140.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tip100 | |
| Hvulgare_HORVU3Hr1G093140.12 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Hvulgare_HORVU3Hr1G093140.12 | SwissProt | 2021-04-01 | Q05609 | 1.47e-4 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
