Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU3Hr1G105930 [ HORVU3Hr1G105930] |
chr3H | 670282529 | 670287941 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU3Hr1G105930.16 HORVU3Hr1G105930.16 |
Low | No | 1125 | OG0042259 | Get ORF Coding potential... Type: noncoding Potential: -0.657 Folding energies... MFEI: -33.431 AMFE: -0.703 GC content %: 47.556 | |
Hvulgare_HORVU3Hr1G105930.27 HORVU3Hr1G105930.27 |
Low | Yes | 962 | OG0042260 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -32.859 AMFE: -0.758 GC content %: 43.347 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Hvulgare_HORVU3Hr1G105930.27 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
Hvulgare_HORVU3Hr1G105930.16 | SwissProt | 2021-04-01 | Q99020 | 1.94e-8 |
Hvulgare_HORVU3Hr1G105930.27 | SwissProt | 2021-04-01 | P48809 | 8.88e-6 |
Hvulgare_HORVU3Hr1G105930.27 | Rfam | 14.6 | MIR1122 | 6.4e-17 |