GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Hvulgare_HORVU3Hr1G110740 [ HORVU3Hr1G110740]	chr3H	682060143	682069174	r1	Hordeum vulgare (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Hvulgare_HORVU3Hr1G110740.19 HORVU3Hr1G110740.19	High	No	2377	OG0042358		Get ORF Coding potential... Type: noncoding Potential: -0.545 Folding energies... MFEI: -27.072 AMFE: -0.619 GC content %: 43.753
Hvulgare_HORVU3Hr1G110740.21 HORVU3Hr1G110740.21	High	No	621	OG0042359		Get ORF Coding potential... Type: noncoding Potential: -0.390 Folding energies... MFEI: -26.940 AMFE: -0.547 GC content %: 49.275
Hvulgare_HORVU3Hr1G110740.23 HORVU3Hr1G110740.23	High	No	2023	OG0042360		Get ORF Coding potential... Type: noncoding Potential: -0.531 Folding energies... MFEI: -24.187 AMFE: -0.590 GC content %: 41.028

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).