GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Hvulgare_HORVU3Hr1G117940 [ HORVU3Hr1G117940]	chr3H	699650125	699651507	r1	Hordeum vulgare (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Hvulgare_HORVU3Hr1G117940.1 HORVU3Hr1G117940.1	High	No	526	OG0005878		Get ORF Coding potential... Type: noncoding Potential: -0.520 Folding energies... MFEI: -36.901 AMFE: -0.693 GC content %: 53.232
Hvulgare_HORVU3Hr1G117940.2 HORVU3Hr1G117940.2	High	No	533	OG0005878		Get ORF Coding potential... Type: noncoding Potential: -0.523 Folding energies... MFEI: -36.792 AMFE: -0.688 GC content %: 53.471
Hvulgare_HORVU3Hr1G117940.3 HORVU3Hr1G117940.3	High	No	465	OG0005878		Get ORF Coding potential... Type: noncoding Potential: -0.478 Folding energies... MFEI: -35.462 AMFE: -0.720 GC content %: 49.247

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).