Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU4Hr1G002500 [ HORVU4Hr1G002500] |
chr4H | 4802421 | 4805961 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU4Hr1G002500.1 HORVU4Hr1G002500.1 |
Low | No | 1771 | OG0042518 | Get ORF Coding potential... Type: noncoding Potential: -0.803 Folding energies... MFEI: -26.256 AMFE: -0.651 GC content %: 40.316 | |
Hvulgare_HORVU4Hr1G002500.5 HORVU4Hr1G002500.5 |
Low | No | 665 | OG0012715 | Get ORF Coding potential... Type: noncoding Potential: -0.485 Folding energies... MFEI: -26.857 AMFE: -0.584 GC content %: 46.015 | |
Hvulgare_HORVU4Hr1G002500.8 HORVU4Hr1G002500.8 |
Low | No | 677 | OG0012715 | Get ORF Coding potential... Type: noncoding Potential: -0.161 Folding energies... MFEI: -29.749 AMFE: -0.637 GC content %: 46.677 | |
Hvulgare_HORVU4Hr1G002500.9 HORVU4Hr1G002500.9 |
Low | No | 355 | OG0042519 | Get ORF Coding potential... Type: noncoding Potential: -0.579 Folding energies... MFEI: -43.577 AMFE: -0.673 GC content %: 64.789 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Hvulgare_HORVU4Hr1G002500.5 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
Hvulgare_HORVU4Hr1G002500.8 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
Hvulgare_HORVU4Hr1G002500.9 | SwissProt | 2021-04-01 | Q06672 | 1.91e-4 |
Hvulgare_HORVU4Hr1G002500.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |