Hvulgare HORVU4Hr1G007150
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G007150 [ HORVU4Hr1G007150] |
chr4H | 18749171 | 18752039 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G007150.1 HORVU4Hr1G007150.1 |
Low | No | 523 | OG0001421 | Get ORF Coding potential... Type: noncoding Potential: -1.099 Folding energies... MFEI: -23.824 AMFE: -0.580 GC content %: 41.109 | |
| Hvulgare_HORVU4Hr1G007150.10 HORVU4Hr1G007150.10 |
High | No | 679 | OG0001421 | Get ORF Coding potential... Type: noncoding Potential: -1.232 Folding energies... MFEI: -24.271 AMFE: -0.613 GC content %: 39.617 | |
| Hvulgare_HORVU4Hr1G007150.11 HORVU4Hr1G007150.11 |
Low | No | 1491 | OG0042628 | Get ORF Coding potential... Type: noncoding Potential: -1.070 Folding energies... MFEI: -27.740 AMFE: -0.567 GC content %: 48.960 | |
| Hvulgare_HORVU4Hr1G007150.12 HORVU4Hr1G007150.12 |
High | No | 1526 | OG0005883 | Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -28.650 AMFE: -0.558 GC content %: 51.311 | |
| Hvulgare_HORVU4Hr1G007150.13 HORVU4Hr1G007150.13 |
High | No | 1515 | OG0005883 | Get ORF Coding potential... Type: noncoding Potential: -1.006 Folding energies... MFEI: -28.607 AMFE: -0.559 GC content %: 51.221 | |
| Hvulgare_HORVU4Hr1G007150.14 HORVU4Hr1G007150.14 |
High | No | 512 | OG0001421 | Get ORF Coding potential... Type: noncoding Potential: -1.113 Folding energies... MFEI: -23.770 AMFE: -0.582 GC content %: 40.820 | |
| Hvulgare_HORVU4Hr1G007150.15 HORVU4Hr1G007150.15 |
High | No | 1130 | OG0042629 | Get ORF Coding potential... Type: noncoding Potential: -1.026 Folding energies... MFEI: -24.460 AMFE: -0.631 GC content %: 38.761 | |
| Hvulgare_HORVU4Hr1G007150.17 HORVU4Hr1G007150.17 |
High | No | 1476 | OG0012732 | Get ORF Coding potential... Type: noncoding Potential: -1.036 Folding energies... MFEI: -27.696 AMFE: -0.588 GC content %: 47.087 | |
| Hvulgare_HORVU4Hr1G007150.18 HORVU4Hr1G007150.18 |
High | No | 533 | OG0001421 | Get ORF Coding potential... Type: noncoding Potential: -1.193 Folding energies... MFEI: -23.846 AMFE: -0.578 GC content %: 41.276 | |
| Hvulgare_HORVU4Hr1G007150.19 HORVU4Hr1G007150.19 |
High | No | 543 | OG0001421 | Get ORF Coding potential... Type: noncoding Potential: -1.105 Folding energies... MFEI: -24.733 AMFE: -0.605 GC content %: 40.884 | |
| Hvulgare_HORVU4Hr1G007150.2 HORVU4Hr1G007150.2 |
Low | No | 1208 | OG0000639 | Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -27.831 AMFE: -0.623 GC content %: 44.702 | |
| Hvulgare_HORVU4Hr1G007150.20 HORVU4Hr1G007150.20 |
High | No | 951 | OG0012733 | Get ORF Coding potential... Type: noncoding Potential: -0.919 Folding energies... MFEI: -26.951 AMFE: -0.621 GC content %: 43.428 | |
| Hvulgare_HORVU4Hr1G007150.21 HORVU4Hr1G007150.21 |
Low | No | 680 | OG0042630 | Get ORF Coding potential... Type: noncoding Potential: -0.832 Folding energies... MFEI: -24.588 AMFE: -0.606 GC content %: 40.588 | |
| Hvulgare_HORVU4Hr1G007150.22 HORVU4Hr1G007150.22 |
Low | No | 746 | OG0042631 | Get ORF Coding potential... Type: noncoding Potential: -0.617 Folding energies... MFEI: -25.764 AMFE: -0.604 GC content %: 42.627 | |
| Hvulgare_HORVU4Hr1G007150.23 HORVU4Hr1G007150.23 |
High | No | 1374 | OG0042632 | Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -27.686 AMFE: -0.574 GC content %: 48.253 | |
| Hvulgare_HORVU4Hr1G007150.24 HORVU4Hr1G007150.24 |
High | No | 1071 | OG0042633 | Get ORF Coding potential... Type: noncoding Potential: -0.971 Folding energies... MFEI: -26.657 AMFE: -0.617 GC content %: 43.231 | |
| Hvulgare_HORVU4Hr1G007150.25 HORVU4Hr1G007150.25 |
High | No | 1014 | OG0042634 | Get ORF Coding potential... Type: noncoding Potential: -1.276 Folding energies... MFEI: -27.890 AMFE: -0.633 GC content %: 44.083 | |
| Hvulgare_HORVU4Hr1G007150.26 HORVU4Hr1G007150.26 |
High | No | 1178 | OG0042635 | Get ORF Coding potential... Type: noncoding Potential: -1.111 Folding energies... MFEI: -28.472 AMFE: -0.585 GC content %: 48.642 | |
| Hvulgare_HORVU4Hr1G007150.27 HORVU4Hr1G007150.27 |
High | No | 958 | OG0012732 | Get ORF Coding potential... Type: noncoding Potential: -1.013 Folding energies... MFEI: -24.290 AMFE: -0.622 GC content %: 39.040 | |
| Hvulgare_HORVU4Hr1G007150.29 HORVU4Hr1G007150.29 |
Low | No | 1408 | OG0042636 | Get ORF Coding potential... Type: noncoding Potential: -1.065 Folding energies... MFEI: -29.041 AMFE: -0.566 GC content %: 51.349 | |
| Hvulgare_HORVU4Hr1G007150.30 HORVU4Hr1G007150.30 |
High | No | 2019 | OG0012734 | Get ORF Coding potential... Type: noncoding Potential: -1.045 Folding energies... MFEI: -26.686 AMFE: -0.568 GC content %: 46.954 | |
| Hvulgare_HORVU4Hr1G007150.31 HORVU4Hr1G007150.31 |
High | No | 1053 | OG0001421 | Get ORF Coding potential... Type: noncoding Potential: -0.916 Folding energies... MFEI: -24.644 AMFE: -0.636 GC content %: 38.746 | |
| Hvulgare_HORVU4Hr1G007150.32 HORVU4Hr1G007150.32 |
High | No | 810 | OG0042637 | Get ORF Coding potential... Type: noncoding Potential: -1.143 Folding energies... MFEI: -26.160 AMFE: -0.620 GC content %: 42.222 | |
| Hvulgare_HORVU4Hr1G007150.33 HORVU4Hr1G007150.33 |
High | No | 1201 | OG0012734 | Get ORF Coding potential... Type: noncoding Potential: -0.966 Folding energies... MFEI: -28.668 AMFE: -0.564 GC content %: 50.791 | |
| Hvulgare_HORVU4Hr1G007150.34 HORVU4Hr1G007150.34 |
High | No | 1213 | OG0042638 | Get ORF Coding potential... Type: noncoding Potential: -0.968 Folding energies... MFEI: -28.211 AMFE: -0.564 GC content %: 50.041 | |
| Hvulgare_HORVU4Hr1G007150.35 HORVU4Hr1G007150.35 |
Low | No | 906 | OG0042639 | Get ORF Coding potential... Type: noncoding Potential: -0.603 Folding energies... MFEI: -27.969 AMFE: -0.617 GC content %: 45.364 | |
| Hvulgare_HORVU4Hr1G007150.38 HORVU4Hr1G007150.38 |
High | No | 910 | OG0000639 | Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -30.220 AMFE: -0.595 GC content %: 50.769 | |
| Hvulgare_HORVU4Hr1G007150.39 HORVU4Hr1G007150.39 |
High | No | 1009 | OG0042640 | Get ORF Coding potential... Type: noncoding Potential: -0.932 Folding energies... MFEI: -28.821 AMFE: -0.580 GC content %: 49.653 | |
| Hvulgare_HORVU4Hr1G007150.40 HORVU4Hr1G007150.40 |
High | No | 956 | OG0042641 | Get ORF Coding potential... Type: noncoding Potential: -0.899 Folding energies... MFEI: -23.494 AMFE: -0.593 GC content %: 39.644 | |
| Hvulgare_HORVU4Hr1G007150.41 HORVU4Hr1G007150.41 |
Low | No | 554 | OG0012733 | Get ORF Coding potential... Type: noncoding Potential: -0.781 Folding energies... MFEI: -25.722 AMFE: -0.579 GC content %: 44.404 | |
| Hvulgare_HORVU4Hr1G007150.42 HORVU4Hr1G007150.42 |
High | No | 995 | OG0042642 | Get ORF Coding potential... Type: noncoding Potential: -1.058 Folding energies... MFEI: -27.266 AMFE: -0.615 GC content %: 44.322 | |
| Hvulgare_HORVU4Hr1G007150.43 HORVU4Hr1G007150.43 |
Low | No | 856 | OG0042643 | Get ORF Coding potential... Type: noncoding Potential: -0.969 Folding energies... MFEI: -27.488 AMFE: -0.610 GC content %: 45.093 | |
| Hvulgare_HORVU4Hr1G007150.44 HORVU4Hr1G007150.44 |
High | No | 1019 | OG0012735 | Get ORF Coding potential... Type: noncoding Potential: -0.973 Folding energies... MFEI: -30.177 AMFE: -0.553 GC content %: 54.563 | |
| Hvulgare_HORVU4Hr1G007150.45 HORVU4Hr1G007150.45 |
High | No | 1017 | OG0000639 | Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -29.912 AMFE: -0.548 GC content %: 54.572 | |
| Hvulgare_HORVU4Hr1G007150.46 HORVU4Hr1G007150.46 |
High | No | 1020 | OG0012735 | Get ORF Coding potential... Type: noncoding Potential: -0.934 Folding energies... MFEI: -30.000 AMFE: -0.549 GC content %: 54.608 | |
| Hvulgare_HORVU4Hr1G007150.47 HORVU4Hr1G007150.47 |
High | No | 1101 | OG0000639 | Get ORF Coding potential... Type: noncoding Potential: -1.015 Folding energies... MFEI: -29.891 AMFE: -0.558 GC content %: 53.588 | |
| Hvulgare_HORVU4Hr1G007150.48 HORVU4Hr1G007150.48 |
High | No | 1465 | OG0000639 | Get ORF Coding potential... Type: noncoding Potential: -0.965 Folding energies... MFEI: -26.287 AMFE: -0.599 GC content %: 43.891 | |
| Hvulgare_HORVU4Hr1G007150.49 HORVU4Hr1G007150.49 |
High | No | 915 | OG0042644 | Get ORF Coding potential... Type: noncoding Potential: -1.167 Folding energies... MFEI: -21.825 AMFE: -0.534 GC content %: 40.874 | |
| Hvulgare_HORVU4Hr1G007150.5 HORVU4Hr1G007150.5 |
Low | No | 1318 | OG0000639 | Get ORF Coding potential... Type: noncoding Potential: -0.979 Folding energies... MFEI: -28.293 AMFE: -0.565 GC content %: 50.076 | |
| Hvulgare_HORVU4Hr1G007150.50 HORVU4Hr1G007150.50 |
High | No | 598 | OG0042645 | Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -20.953 AMFE: -0.535 GC content %: 39.130 | |
| Hvulgare_HORVU4Hr1G007150.51 HORVU4Hr1G007150.51 |
High | No | 1052 | OG0000639 | Get ORF Coding potential... Type: noncoding Potential: -1.182 Folding energies... MFEI: -24.705 AMFE: -0.548 GC content %: 45.057 | |
| Hvulgare_HORVU4Hr1G007150.52 HORVU4Hr1G007150.52 |
High | No | 1150 | OG0042646 | Get ORF Coding potential... Type: noncoding Potential: -1.047 Folding energies... MFEI: -24.983 AMFE: -0.496 GC content %: 50.348 | |
| Hvulgare_HORVU4Hr1G007150.53 HORVU4Hr1G007150.53 |
High | No | 815 | OG0042647 | Get ORF Coding potential... Type: noncoding Potential: -1.119 Folding energies... MFEI: -24.515 AMFE: -0.557 GC content %: 44.049 | |
| Hvulgare_HORVU4Hr1G007150.6 HORVU4Hr1G007150.6 |
Low | No | 1416 | OG0005883 | Get ORF Coding potential... Type: noncoding Potential: -0.995 Folding energies... MFEI: -27.373 AMFE: -0.555 GC content %: 49.364 | |
| Hvulgare_HORVU4Hr1G007150.7 HORVU4Hr1G007150.7 |
Low | No | 1335 | OG0000639 | Get ORF Coding potential... Type: noncoding Potential: -0.985 Folding energies... MFEI: -28.382 AMFE: -0.559 GC content %: 50.787 | |
| Hvulgare_HORVU4Hr1G007150.9 HORVU4Hr1G007150.9 |
High | No | 1256 | OG0000639 | Get ORF Coding potential... Type: noncoding Potential: -0.975 Folding energies... MFEI: -28.352 AMFE: -0.575 GC content %: 49.283 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G007150.5 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Hvulgare_HORVU4Hr1G007150.35 | SwissProt | 2021-04-01 | B0NAQ4 | 5.65e-10 |
| Hvulgare_HORVU4Hr1G007150.6 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Hvulgare_HORVU4Hr1G007150.41 | SwissProt | 2021-04-01 | Q795R8 | 3.3e-4 |
| Hvulgare_HORVU4Hr1G007150.11 | SwissProt | 2021-04-01 | P37631 | 8.04e-4 |
| Hvulgare_HORVU4Hr1G007150.7 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Hvulgare_HORVU4Hr1G007150.43 | SwissProt | 2021-04-01 | B0NAQ4 | 4.41e-4 |
| Hvulgare_HORVU4Hr1G007150.21 | SwissProt | 2021-04-01 | Q795R8 | 4.3e-4 |
| Hvulgare_HORVU4Hr1G007150.1 | RepBase (RepeatMasker) | 2014-01-31 | Unknown | |
| Hvulgare_HORVU4Hr1G007150.22 | SwissProt | 2021-04-01 | Q795R8 | 7.93e-7 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
