Hvulgare HORVU4Hr1G019230
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G019230 [ HORVU4Hr1G019230] |
chr4H | 91547711 | 91593591 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G019230.14 HORVU4Hr1G019230.14 |
Low | No | 522 | OG0042927 | Get ORF Coding potential... Type: noncoding Potential: -0.655 Folding energies... MFEI: -28.774 AMFE: -0.598 GC content %: 48.084 | |
| Hvulgare_HORVU4Hr1G019230.18 HORVU4Hr1G019230.18 |
Low | No | 496 | OG0012753 | Get ORF Coding potential... Type: noncoding Potential: -0.917 Folding energies... MFEI: -26.452 AMFE: -0.551 GC content %: 47.984 | |
| Hvulgare_HORVU4Hr1G019230.19 HORVU4Hr1G019230.19 |
Low | No | 561 | OG0012753 | Get ORF Coding potential... Type: noncoding Potential: -0.569 Folding energies... MFEI: -26.328 AMFE: -0.559 GC content %: 47.059 | |
| Hvulgare_HORVU4Hr1G019230.20 HORVU4Hr1G019230.20 |
Low | No | 1157 | OG0042928 | Get ORF Coding potential... Type: noncoding Potential: -0.366 Folding energies... MFEI: -37.995 AMFE: -0.682 GC content %: 55.748 | |
| Hvulgare_HORVU4Hr1G019230.25 HORVU4Hr1G019230.25 |
Low | No | 969 | OG0042929 | Get ORF Coding potential... Type: noncoding Potential: -0.330 Folding energies... MFEI: -35.108 AMFE: -0.653 GC content %: 53.767 | |
| Hvulgare_HORVU4Hr1G019230.3 HORVU4Hr1G019230.3 |
Low | No | 953 | OG0042930 | Get ORF Coding potential... Type: noncoding Potential: -0.416 Folding energies... MFEI: -26.999 AMFE: -0.625 GC content %: 43.232 | |
| Hvulgare_HORVU4Hr1G019230.31 HORVU4Hr1G019230.31 |
High | No | 1174 | OG0042931 | Get ORF Coding potential... Type: noncoding Potential: -0.714 Folding energies... MFEI: -22.973 AMFE: -0.586 GC content %: 39.182 | |
| Hvulgare_HORVU4Hr1G019230.32 HORVU4Hr1G019230.32 |
High | No | 569 | OG0042932 | Get ORF Coding potential... Type: noncoding Potential: -0.784 Folding energies... MFEI: -28.629 AMFE: -0.622 GC content %: 46.046 | |
| Hvulgare_HORVU4Hr1G019230.33 HORVU4Hr1G019230.33 |
High | No | 664 | OG0042933 | Get ORF Coding potential... Type: noncoding Potential: -0.840 Folding energies... MFEI: -38.780 AMFE: -0.633 GC content %: 61.295 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G019230.25 | SwissProt | 2021-04-01 | Q9SCS4 | 1.56e-7 |
| Hvulgare_HORVU4Hr1G019230.3 | SwissProt | 2021-04-01 | Q9SCS4 | 1.68e-7 |
| Hvulgare_HORVU4Hr1G019230.14 | SwissProt | 2021-04-01 | Q9SCS4 | 2.78e-8 |
| Hvulgare_HORVU4Hr1G019230.18 | SwissProt | 2021-04-01 | Q9SCS4 | 7.56e-8 |
| Hvulgare_HORVU4Hr1G019230.19 | SwissProt | 2021-04-01 | Q9SCS4 | 3.24e-8 |
| Hvulgare_HORVU4Hr1G019230.20 | SwissProt | 2021-04-01 | Q9SCS4 | 2.33e-7 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
