Hvulgare HORVU4Hr1G021660
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G021660 [ HORVU4Hr1G021660] |
chr4H | 112468234 | 112479270 | r1 | Hordeum vulgare (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G021660.1 HORVU4Hr1G021660.1 |
High | No | 422 | OG0012756 | Get ORF Coding potential... Type: noncoding Potential: -1.118 Folding energies... MFEI: -28.199 AMFE: -0.601 GC content %: 46.919 | |
| Hvulgare_HORVU4Hr1G021660.2 HORVU4Hr1G021660.2 |
High | No | 570 | OG0012756 | Get ORF Coding potential... Type: noncoding Potential: -1.125 Folding energies... MFEI: -28.877 AMFE: -0.558 GC content %: 51.754 | |
| Hvulgare_HORVU4Hr1G021660.3 HORVU4Hr1G021660.3 |
High | No | 1106 | OG0042974 | Get ORF Coding potential... Type: noncoding Potential: -1.245 Folding energies... MFEI: -27.731 AMFE: -0.670 GC content %: 41.410 | |
| Hvulgare_HORVU4Hr1G021660.4 HORVU4Hr1G021660.4 |
Low | No | 1016 | OG0005891 | Get ORF Coding potential... Type: noncoding Potential: -1.012 Folding energies... MFEI: -29.606 AMFE: -0.613 GC content %: 48.327 | |
| Hvulgare_HORVU4Hr1G021660.5 HORVU4Hr1G021660.5 |
Low | No | 1969 | OG0042975 | Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -30.254 AMFE: -0.666 GC content %: 45.455 | |
| Hvulgare_HORVU4Hr1G021660.6 HORVU4Hr1G021660.6 |
Low | No | 1016 | OG0005891 | Get ORF Coding potential... Type: noncoding Potential: -1.012 Folding energies... MFEI: -29.606 AMFE: -0.613 GC content %: 48.327 | |
| Hvulgare_HORVU4Hr1G021660.7 HORVU4Hr1G021660.7 |
Low | No | 887 | OG0042976 | Get ORF Coding potential... Type: noncoding Potential: -0.978 Folding energies... MFEI: -29.887 AMFE: -0.617 GC content %: 48.478 | |
| Hvulgare_HORVU4Hr1G021660.8 HORVU4Hr1G021660.8 |
Low | No | 1167 | OG0005891 | Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -30.317 AMFE: -0.624 GC content %: 48.586 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G021660.4 | SwissProt | 2021-04-01 | Q9LZ19 | 2.65e-6 |
| Hvulgare_HORVU4Hr1G021660.5 | SwissProt | 2021-04-01 | Q9LZ19 | 5.9e-6 |
| Hvulgare_HORVU4Hr1G021660.6 | SwissProt | 2021-04-01 | Q9LZ19 | 2.65e-6 |
| Hvulgare_HORVU4Hr1G021660.7 | SwissProt | 2021-04-01 | Q9LZ19 | 6.44e-5 |
| Hvulgare_HORVU4Hr1G021660.8 | SwissProt | 2021-04-01 | Q9LZ19 | 3.17e-6 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
