Hvulgare HORVU4Hr1G024050
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G024050 [ HORVU4Hr1G024050] |
chr4H | 135471086 | 135479877 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G024050.10 HORVU4Hr1G024050.10 |
High | No | 723 | OG0000999 | Get ORF Coding potential... Type: noncoding Potential: -0.367 Folding energies... MFEI: -32.227 AMFE: -0.649 GC content %: 49.654 | |
| Hvulgare_HORVU4Hr1G024050.11 HORVU4Hr1G024050.11 |
High | No | 571 | OG0003297 | Get ORF Coding potential... Type: noncoding Potential: -0.555 Folding energies... MFEI: -27.531 AMFE: -0.609 GC content %: 45.184 | |
| Hvulgare_HORVU4Hr1G024050.6 HORVU4Hr1G024050.6 |
High | No | 1025 | OG0003297 | Get ORF Coding potential... Type: noncoding Potential: -0.252 Folding energies... MFEI: -32.429 AMFE: -0.662 GC content %: 48.976 | |
| Hvulgare_HORVU4Hr1G024050.7 HORVU4Hr1G024050.7 |
High | No | 952 | OG0003297 | Get ORF Coding potential... Type: noncoding Potential: -0.232 Folding energies... MFEI: -31.964 AMFE: -0.663 GC content %: 48.214 | |
| Hvulgare_HORVU4Hr1G024050.8 HORVU4Hr1G024050.8 |
High | No | 1025 | OG0003297 | Get ORF Coding potential... Type: noncoding Potential: -0.271 Folding energies... MFEI: -33.229 AMFE: -0.668 GC content %: 49.756 | |
| Hvulgare_HORVU4Hr1G024050.9 HORVU4Hr1G024050.9 |
High | No | 902 | OG0043044 | Get ORF Coding potential... Type: noncoding Potential: -0.868 Folding energies... MFEI: -33.404 AMFE: -0.655 GC content %: 50.998 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
