Hvulgare HORVU4Hr1G032660
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G032660 [ HORVU4Hr1G032660] |
chr4H | 224117211 | 224121441 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G032660.1 HORVU4Hr1G032660.1 |
Low | No | 2043 | OG0000640 | Get ORF Coding potential... Type: noncoding Potential: -0.774 Folding energies... MFEI: -29.388 AMFE: -0.600 GC content %: 48.948 | |
| Hvulgare_HORVU4Hr1G032660.10 HORVU4Hr1G032660.10 |
Low | No | 1293 | OG0000640 | Get ORF Coding potential... Type: noncoding Potential: -0.805 Folding energies... MFEI: -27.401 AMFE: -0.638 GC content %: 42.923 | |
| Hvulgare_HORVU4Hr1G032660.11 HORVU4Hr1G032660.11 |
Low | No | 1851 | OG0000640 | Get ORF Coding potential... Type: noncoding Potential: -0.841 Folding energies... MFEI: -30.227 AMFE: -0.595 GC content %: 50.783 | |
| Hvulgare_HORVU4Hr1G032660.15 HORVU4Hr1G032660.15 |
Low | No | 1426 | OG0043178 | Get ORF Coding potential... Type: noncoding Potential: -0.701 Folding energies... MFEI: -30.168 AMFE: -0.635 GC content %: 47.546 | |
| Hvulgare_HORVU4Hr1G032660.16 HORVU4Hr1G032660.16 |
Low | No | 1469 | OG0043179 | Get ORF Coding potential... Type: noncoding Potential: -0.816 Folding energies... MFEI: -30.449 AMFE: -0.631 GC content %: 48.264 | |
| Hvulgare_HORVU4Hr1G032660.17 HORVU4Hr1G032660.17 |
Low | No | 1602 | OG0000640 | Get ORF Coding potential... Type: noncoding Potential: -0.824 Folding energies... MFEI: -30.362 AMFE: -0.638 GC content %: 47.566 | |
| Hvulgare_HORVU4Hr1G032660.18 HORVU4Hr1G032660.18 |
Low | No | 2960 | OG0043180 | Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -28.324 AMFE: -0.612 GC content %: 46.250 | |
| Hvulgare_HORVU4Hr1G032660.19 HORVU4Hr1G032660.19 |
Low | No | 1766 | OG0000640 | Get ORF Coding potential... Type: noncoding Potential: -0.848 Folding energies... MFEI: -29.247 AMFE: -0.641 GC content %: 45.640 | |
| Hvulgare_HORVU4Hr1G032660.22 HORVU4Hr1G032660.22 |
Low | No | 1786 | OG0000640 | Get ORF Coding potential... Type: noncoding Potential: -0.837 Folding energies... MFEI: -29.496 AMFE: -0.623 GC content %: 47.312 | |
| Hvulgare_HORVU4Hr1G032660.24 HORVU4Hr1G032660.24 |
Low | No | 1827 | OG0000640 | Get ORF Coding potential... Type: noncoding Potential: -0.488 Folding energies... MFEI: -30.203 AMFE: -0.614 GC content %: 49.152 | |
| Hvulgare_HORVU4Hr1G032660.4 HORVU4Hr1G032660.4 |
Low | No | 2034 | OG0000640 | Get ORF Coding potential... Type: noncoding Potential: -0.854 Folding energies... MFEI: -30.084 AMFE: -0.608 GC content %: 49.508 | |
| Hvulgare_HORVU4Hr1G032660.6 HORVU4Hr1G032660.6 |
Low | No | 2012 | OG0000640 | Get ORF Coding potential... Type: noncoding Potential: -0.852 Folding energies... MFEI: -29.264 AMFE: -0.620 GC content %: 47.217 | |
| Hvulgare_HORVU4Hr1G032660.8 HORVU4Hr1G032660.8 |
Low | No | 1002 | OG0043181 | Get ORF Coding potential... Type: noncoding Potential: -0.921 Folding energies... MFEI: -24.621 AMFE: -0.626 GC content %: 39.321 | |
| Hvulgare_HORVU4Hr1G032660.9 HORVU4Hr1G032660.9 |
Low | No | 1113 | OG0043182 | Get ORF Coding potential... Type: noncoding Potential: -0.709 Folding energies... MFEI: -23.675 AMFE: -0.621 GC content %: 38.095 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G032660.18 | SwissProt | 2021-04-01 | Q336N8 | 1.4e-6 |
| Hvulgare_HORVU4Hr1G032660.10 | SwissProt | 2021-04-01 | Q336N8 | 6.34e-6 |
| Hvulgare_HORVU4Hr1G032660.8 | SwissProt | 2021-04-01 | Q336N8 | 3.62e-6 |
| Hvulgare_HORVU4Hr1G032660.19 | SwissProt | 2021-04-01 | Q336N8 | 1.07e-5 |
| Hvulgare_HORVU4Hr1G032660.11 | SwissProt | 2021-04-01 | Q336N8 | 1.15e-5 |
| Hvulgare_HORVU4Hr1G032660.9 | SwissProt | 2021-04-01 | P49397 | 1.37e-6 |
| Hvulgare_HORVU4Hr1G032660.22 | SwissProt | 2021-04-01 | Q336N8 | 1.09e-5 |
| Hvulgare_HORVU4Hr1G032660.15 | SwissProt | 2021-04-01 | P49397 | 2.64e-6 |
| Hvulgare_HORVU4Hr1G032660.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Hvulgare_HORVU4Hr1G032660.24 | SwissProt | 2021-04-01 | Q336N8 | 1.35e-5 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
