Hvulgare HORVU4Hr1G045700
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G045700 [ HORVU4Hr1G045700] |
chr4H | 364284852 | 364287726 | r1 | Hordeum vulgare (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G045700.1 HORVU4Hr1G045700.1 |
Low | No | 1581 | OG0043357 | Get ORF Coding potential... Type: noncoding Potential: -1.247 Folding energies... MFEI: -21.208 AMFE: -0.576 GC content %: 36.812 | |
| Hvulgare_HORVU4Hr1G045700.10 HORVU4Hr1G045700.10 |
Low | No | 2680 | OG0000641 | Get ORF Coding potential... Type: noncoding Potential: -1.277 Folding energies... MFEI: -24.705 AMFE: -0.605 GC content %: 40.858 | |
| Hvulgare_HORVU4Hr1G045700.11 HORVU4Hr1G045700.11 |
Low | No | 2234 | OG0000641 | Get ORF Coding potential... Type: noncoding Potential: -1.268 Folding energies... MFEI: -25.045 AMFE: -0.600 GC content %: 41.764 | |
| Hvulgare_HORVU4Hr1G045700.12 HORVU4Hr1G045700.12 |
Low | No | 462 | OG0043358 | Get ORF Coding potential... Type: noncoding Potential: -1.088 Folding energies... MFEI: -30.238 AMFE: -0.546 GC content %: 55.411 | |
| Hvulgare_HORVU4Hr1G045700.2 HORVU4Hr1G045700.2 |
Low | No | 2664 | OG0000641 | Get ORF Coding potential... Type: noncoding Potential: -1.277 Folding energies... MFEI: -24.399 AMFE: -0.600 GC content %: 40.691 | |
| Hvulgare_HORVU4Hr1G045700.3 HORVU4Hr1G045700.3 |
Low | No | 2503 | OG0000641 | Get ORF Coding potential... Type: noncoding Potential: -1.274 Folding energies... MFEI: -24.706 AMFE: -0.600 GC content %: 41.191 | |
| Hvulgare_HORVU4Hr1G045700.4 HORVU4Hr1G045700.4 |
Low | No | 2634 | OG0000641 | Get ORF Coding potential... Type: noncoding Potential: -1.276 Folding energies... MFEI: -24.666 AMFE: -0.604 GC content %: 40.812 | |
| Hvulgare_HORVU4Hr1G045700.5 HORVU4Hr1G045700.5 |
Low | No | 584 | OG0043359 | Get ORF Coding potential... Type: noncoding Potential: -1.018 Folding energies... MFEI: -28.014 AMFE: -0.576 GC content %: 48.630 | |
| Hvulgare_HORVU4Hr1G045700.6 HORVU4Hr1G045700.6 |
Low | No | 2646 | OG0000641 | Get ORF Coding potential... Type: noncoding Potential: -1.280 Folding energies... MFEI: -24.649 AMFE: -0.604 GC content %: 40.816 | |
| Hvulgare_HORVU4Hr1G045700.7 HORVU4Hr1G045700.7 |
Low | No | 2599 | OG0000641 | Get ORF Coding potential... Type: noncoding Potential: -1.278 Folding energies... MFEI: -24.821 AMFE: -0.601 GC content %: 41.324 | |
| Hvulgare_HORVU4Hr1G045700.8 HORVU4Hr1G045700.8 |
Low | No | 2874 | OG0000641 | Get ORF Coding potential... Type: noncoding Potential: -1.287 Folding energies... MFEI: -24.360 AMFE: -0.599 GC content %: 40.640 | |
| Hvulgare_HORVU4Hr1G045700.9 HORVU4Hr1G045700.9 |
Low | No | 2472 | OG0000641 | Get ORF Coding potential... Type: noncoding Potential: -1.273 Folding energies... MFEI: -24.984 AMFE: -0.605 GC content %: 41.303 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G045700.11 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Hvulgare_HORVU4Hr1G045700.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Hvulgare_HORVU4Hr1G045700.12 | RepBase (RepeatMasker) | 2014-01-31 | Unknown | |
| Hvulgare_HORVU4Hr1G045700.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Hvulgare_HORVU4Hr1G045700.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Hvulgare_HORVU4Hr1G045700.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; Unknown | |
| Hvulgare_HORVU4Hr1G045700.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Hvulgare_HORVU4Hr1G045700.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Hvulgare_HORVU4Hr1G045700.9 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Hvulgare_HORVU4Hr1G045700.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
