GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Hvulgare_HORVU4Hr1G046620 [ HORVU4Hr1G046620]	chr4H	372556549	372557344	r1	Hordeum vulgare (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Hvulgare_HORVU4Hr1G046620.1 HORVU4Hr1G046620.1	High	No	238	OG0043368		Get ORF Coding potential... Type: noncoding Potential: -0.918 Folding energies... MFEI: -18.630 AMFE: -0.472 GC content %: 39.496
Hvulgare_HORVU4Hr1G046620.2 HORVU4Hr1G046620.2	High	No	223	OG0043369		Get ORF Coding potential... Type: noncoding Potential: -0.756 Folding energies... MFEI: -21.525 AMFE: -0.527 GC content %: 40.807

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).