Hvulgare HORVU4Hr1G047770
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G047770 [ HORVU4Hr1G047770] |
chr4H | 384808560 | 384812854 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G047770.15 HORVU4Hr1G047770.15 |
Low | No | 1294 | OG0012797 | Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -30.247 AMFE: -0.646 GC content %: 46.832 | |
| Hvulgare_HORVU4Hr1G047770.16 HORVU4Hr1G047770.16 |
Low | No | 1199 | OG0012798 | Get ORF Coding potential... Type: noncoding Potential: -1.192 Folding energies... MFEI: -32.469 AMFE: -0.645 GC content %: 50.375 | |
| Hvulgare_HORVU4Hr1G047770.17 HORVU4Hr1G047770.17 |
Low | No | 1581 | OG0012797 | Get ORF Coding potential... Type: noncoding Potential: -1.220 Folding energies... MFEI: -30.380 AMFE: -0.643 GC content %: 47.249 | |
| Hvulgare_HORVU4Hr1G047770.18 HORVU4Hr1G047770.18 |
Low | No | 914 | OG0012799 | Get ORF Coding potential... Type: noncoding Potential: -1.156 Folding energies... MFEI: -31.904 AMFE: -0.624 GC content %: 51.094 | |
| Hvulgare_HORVU4Hr1G047770.19 HORVU4Hr1G047770.19 |
Low | No | 1347 | OG0012800 | Get ORF Coding potential... Type: noncoding Potential: -1.205 Folding energies... MFEI: -30.386 AMFE: -0.631 GC content %: 48.181 | |
| Hvulgare_HORVU4Hr1G047770.20 HORVU4Hr1G047770.20 |
Low | No | 1099 | OG0012798 | Get ORF Coding potential... Type: noncoding Potential: -1.181 Folding energies... MFEI: -29.864 AMFE: -0.609 GC content %: 49.045 | |
| Hvulgare_HORVU4Hr1G047770.21 HORVU4Hr1G047770.21 |
Low | No | 1256 | OG0012800 | Get ORF Coding potential... Type: noncoding Potential: -1.197 Folding energies... MFEI: -30.151 AMFE: -0.621 GC content %: 48.567 | |
| Hvulgare_HORVU4Hr1G047770.22 HORVU4Hr1G047770.22 |
High | No | 482 | OG0043399 | Get ORF Coding potential... Type: noncoding Potential: -1.324 Folding energies... MFEI: -26.349 AMFE: -0.585 GC content %: 45.021 | |
| Hvulgare_HORVU4Hr1G047770.23 HORVU4Hr1G047770.23 |
High | No | 391 | OG0043400 | Get ORF Coding potential... Type: noncoding Potential: -1.381 Folding energies... MFEI: -18.824 AMFE: -0.475 GC content %: 39.642 | |
| Hvulgare_HORVU4Hr1G047770.24 HORVU4Hr1G047770.24 |
High | No | 550 | OG0043401 | Get ORF Coding potential... Type: noncoding Potential: -1.254 Folding energies... MFEI: -16.109 AMFE: -0.492 GC content %: 32.727 | |
| Hvulgare_HORVU4Hr1G047770.25 HORVU4Hr1G047770.25 |
High | No | 659 | OG0043402 | Get ORF Coding potential... Type: noncoding Potential: -1.157 Folding energies... MFEI: -27.360 AMFE: -0.541 GC content %: 50.531 | |
| Hvulgare_HORVU4Hr1G047770.5 HORVU4Hr1G047770.5 |
Low | No | 1400 | OG0012799 | Get ORF Coding potential... Type: noncoding Potential: -1.208 Folding energies... MFEI: -32.821 AMFE: -0.641 GC content %: 51.214 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G047770.21 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Hvulgare_HORVU4Hr1G047770.16 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Hvulgare_HORVU4Hr1G047770.19 | SwissProt | 2021-04-01 | Q8RXF8 | 3.7e-10 |
| Hvulgare_HORVU4Hr1G047770.5 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Hvulgare_HORVU4Hr1G047770.17 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Hvulgare_HORVU4Hr1G047770.20 | SwissProt | 2021-04-01 | Q8RXF8 | 1.54e-8 |
| Hvulgare_HORVU4Hr1G047770.15 | SwissProt | 2021-04-01 | F4J0W4 | 3.95e-7 |
| Hvulgare_HORVU4Hr1G047770.18 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Hvulgare_HORVU4Hr1G047770.21 | SwissProt | 2021-04-01 | Q8RXF8 | 8.58e-9 |
| Hvulgare_HORVU4Hr1G047770.16 | SwissProt | 2021-04-01 | Q8RXF8 | 4.73e-9 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
