Hvulgare HORVU4Hr1G050960
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G050960 [ HORVU4Hr1G050960] |
chr4H | 416062191 | 416064590 | r1 | Hordeum vulgare (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G050960.1 HORVU4Hr1G050960.1 |
Low | No | 566 | OG0043460 | Get ORF Coding potential... Type: noncoding Potential: -0.698 Folding energies... MFEI: -31.873 AMFE: -0.668 GC content %: 47.703 | |
| Hvulgare_HORVU4Hr1G050960.2 HORVU4Hr1G050960.2 |
Low | No | 561 | OG0043461 | Get ORF Coding potential... Type: noncoding Potential: -0.695 Folding energies... MFEI: -33.387 AMFE: -0.679 GC content %: 49.198 | |
| Hvulgare_HORVU4Hr1G050960.3 HORVU4Hr1G050960.3 |
Low | No | 713 | OG0043462 | Get ORF Coding potential... Type: noncoding Potential: -0.758 Folding energies... MFEI: -33.408 AMFE: -0.683 GC content %: 48.948 | |
| Hvulgare_HORVU4Hr1G050960.4 HORVU4Hr1G050960.4 |
Low | No | 516 | OG0012803 | Get ORF Coding potential... Type: noncoding Potential: -0.672 Folding energies... MFEI: -31.453 AMFE: -0.660 GC content %: 47.674 | |
| Hvulgare_HORVU4Hr1G050960.5 HORVU4Hr1G050960.5 |
Low | No | 510 | OG0012803 | Get ORF Coding potential... Type: noncoding Potential: -0.668 Folding energies... MFEI: -30.588 AMFE: -0.655 GC content %: 46.667 | |
| Hvulgare_HORVU4Hr1G050960.6 HORVU4Hr1G050960.6 |
Low | No | 462 | OG0012804 | Get ORF Coding potential... Type: noncoding Potential: -0.642 Folding energies... MFEI: -31.558 AMFE: -0.642 GC content %: 49.134 | |
| Hvulgare_HORVU4Hr1G050960.7 HORVU4Hr1G050960.7 |
Low | No | 426 | OG0012804 | Get ORF Coding potential... Type: noncoding Potential: -0.712 Folding energies... MFEI: -30.540 AMFE: -0.660 GC content %: 46.244 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G050960.7 | SwissProt | 2021-04-01 | O13825 | 1.03e-8 |
| Hvulgare_HORVU4Hr1G050960.2 | SwissProt | 2021-04-01 | O13825 | 4.52e-8 |
| Hvulgare_HORVU4Hr1G050960.3 | SwissProt | 2021-04-01 | O13825 | 1.32e-7 |
| Hvulgare_HORVU4Hr1G050960.4 | SwissProt | 2021-04-01 | O13825 | 3.08e-8 |
| Hvulgare_HORVU4Hr1G050960.5 | SwissProt | 2021-04-01 | O13825 | 2.82e-8 |
| Hvulgare_HORVU4Hr1G050960.6 | SwissProt | 2021-04-01 | O13825 | 1.46e-8 |
| Hvulgare_HORVU4Hr1G050960.1 | SwissProt | 2021-04-01 | O13825 | 4.12e-8 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
