Hvulgare HORVU4Hr1G060510

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Hvulgare_HORVU4Hr1G060510
[ HORVU4Hr1G060510]
chr4H 508174697 508181321 r1 Hordeum vulgare (Phytozome 13)
Coding?
Yes


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Hvulgare_HORVU4Hr1G060510.1
HORVU4Hr1G060510.1
High No 2140 OG0043619
Coding potential...
Type: noncoding Potential: -1.251
Folding energies...
MFEI: -26.159 AMFE: -0.688
GC content
%: 38.037
Hvulgare_HORVU4Hr1G060510.17
HORVU4Hr1G060510.17
High No 247 OG0004161
Coding potential...
Type: noncoding Potential: -1.040
Folding energies...
MFEI: -31.377 AMFE: -0.578
GC content
%: 54.251
Hvulgare_HORVU4Hr1G060510.18
HORVU4Hr1G060510.18
High No 1196 OG0043620
Coding potential...
Type: noncoding Potential: -1.152
Folding energies...
MFEI: -35.803 AMFE: -0.630
GC content
%: 56.856


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Hvulgare_HORVU4Hr1G060510.png