GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Hvulgare_HORVU4Hr1G060510 [ HORVU4Hr1G060510]	chr4H	508174697	508181321	r1	Hordeum vulgare (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Hvulgare_HORVU4Hr1G060510.1 HORVU4Hr1G060510.1	High	No	2140	OG0043619		Get ORF Coding potential... Type: noncoding Potential: -1.251 Folding energies... MFEI: -26.159 AMFE: -0.688 GC content %: 38.037
Hvulgare_HORVU4Hr1G060510.17 HORVU4Hr1G060510.17	High	No	247	OG0004161		Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -31.377 AMFE: -0.578 GC content %: 54.251
Hvulgare_HORVU4Hr1G060510.18 HORVU4Hr1G060510.18	High	No	1196	OG0043620		Get ORF Coding potential... Type: noncoding Potential: -1.152 Folding energies... MFEI: -35.803 AMFE: -0.630 GC content %: 56.856

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).