Hvulgare HORVU4Hr1G068030
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G068030 [ HORVU4Hr1G068030] |
chr4H | 564712587 | 564718243 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G068030.1 HORVU4Hr1G068030.1 |
Low | No | 504 | OG0000517 | Get ORF Coding potential... Type: noncoding Potential: -0.190 Folding energies... MFEI: -46.567 AMFE: -0.671 GC content %: 69.444 | |
| Hvulgare_HORVU4Hr1G068030.10 HORVU4Hr1G068030.10 |
High | No | 433 | OG0000517 | Get ORF Coding potential... Type: noncoding Potential: -0.742 Folding energies... MFEI: -48.961 AMFE: -0.679 GC content %: 72.055 | |
| Hvulgare_HORVU4Hr1G068030.11 HORVU4Hr1G068030.11 |
Low | No | 552 | OG0000517 | Get ORF Coding potential... Type: noncoding Potential: -0.243 Folding energies... MFEI: -46.105 AMFE: -0.663 GC content %: 69.565 | |
| Hvulgare_HORVU4Hr1G068030.13 HORVU4Hr1G068030.13 |
High | No | 405 | OG0000517 | Get ORF Coding potential... Type: noncoding Potential: -0.968 Folding energies... MFEI: -49.383 AMFE: -0.680 GC content %: 72.593 | |
| Hvulgare_HORVU4Hr1G068030.2 HORVU4Hr1G068030.2 |
Low | No | 504 | OG0000517 | Get ORF Coding potential... Type: noncoding Potential: -0.919 Folding energies... MFEI: -47.401 AMFE: -0.683 GC content %: 69.444 | |
| Hvulgare_HORVU4Hr1G068030.31 HORVU4Hr1G068030.31 |
High | No | 299 | OG0192851 | Get ORF Coding potential... Type: noncoding Potential: -1.144 Folding energies... MFEI: -23.043 AMFE: -0.615 GC content %: 37.458 | |
| Hvulgare_HORVU4Hr1G068030.4 HORVU4Hr1G068030.4 |
Low | No | 469 | OG0000517 | Get ORF Coding potential... Type: noncoding Potential: -0.951 Folding energies... MFEI: -46.695 AMFE: -0.660 GC content %: 70.789 | |
| Hvulgare_HORVU4Hr1G068030.6 HORVU4Hr1G068030.6 |
High | No | 466 | OG0000517 | Get ORF Coding potential... Type: noncoding Potential: -0.926 Folding energies... MFEI: -47.146 AMFE: -0.664 GC content %: 71.030 | |
| Hvulgare_HORVU4Hr1G068030.7 HORVU4Hr1G068030.7 |
Low | No | 475 | OG0000517 | Get ORF Coding potential... Type: noncoding Potential: -0.908 Folding energies... MFEI: -47.389 AMFE: -0.674 GC content %: 70.316 | |
| Hvulgare_HORVU4Hr1G068030.8 HORVU4Hr1G068030.8 |
High | No | 461 | OG0000517 | Get ORF Coding potential... Type: noncoding Potential: -0.904 Folding energies... MFEI: -46.876 AMFE: -0.659 GC content %: 71.150 | |
| Hvulgare_HORVU4Hr1G068030.9 HORVU4Hr1G068030.9 |
High | No | 363 | OG0000517 | Get ORF Coding potential... Type: noncoding Potential: -1.037 Folding energies... MFEI: -46.198 AMFE: -0.647 GC content %: 71.350 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G068030.4 | SwissProt | 2021-04-01 | Q84JB8 | 2.86e-6 |
| Hvulgare_HORVU4Hr1G068030.7 | SwissProt | 2021-04-01 | Q84JB8 | 4.66e-7 |
| Hvulgare_HORVU4Hr1G068030.1 | SwissProt | 2021-04-01 | Q84JB8 | 1.62e-11 |
| Hvulgare_HORVU4Hr1G068030.11 | SwissProt | 2021-04-01 | Q84JB8 | 5.79e-11 |
| Hvulgare_HORVU4Hr1G068030.2 | SwissProt | 2021-04-01 | Q84JB8 | 4.7e-10 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
