Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU4Hr1G070350 [ HORVU4Hr1G070350] |
chr4H | 574975713 | 574979173 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU4Hr1G070350.11 HORVU4Hr1G070350.11 |
High | No | 577 | OG0043838 | Get ORF Coding potential... Type: noncoding Potential: -0.455 Folding energies... MFEI: -25.650 AMFE: -0.590 GC content %: 43.501 | |
Hvulgare_HORVU4Hr1G070350.3 HORVU4Hr1G070350.3 |
High | No | 445 | OG0043839 | Get ORF Coding potential... Type: noncoding Potential: -0.747 Folding energies... MFEI: -26.584 AMFE: -0.561 GC content %: 47.416 | |
Hvulgare_HORVU4Hr1G070350.4 HORVU4Hr1G070350.4 |
High | No | 910 | OG0043840 | Get ORF Coding potential... Type: noncoding Potential: -0.569 Folding energies... MFEI: -28.176 AMFE: -0.638 GC content %: 44.176 | |
Hvulgare_HORVU4Hr1G070350.8 HORVU4Hr1G070350.8 |
Low | No | 586 | OG0043841 | Get ORF Coding potential... Type: noncoding Potential: -1.072 Folding energies... MFEI: -18.396 AMFE: -0.511 GC content %: 36.007 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Hvulgare_HORVU4Hr1G070350.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA |