Hvulgare HORVU4Hr1G076160
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G076160 [ HORVU4Hr1G076160] |
chr4H | 600034730 | 600037977 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G076160.1 HORVU4Hr1G076160.1 |
Low | No | 2397 | OG0043949 | Get ORF Coding potential... Type: noncoding Potential: -0.893 Folding energies... MFEI: -26.871 AMFE: -0.638 GC content %: 42.136 | |
| Hvulgare_HORVU4Hr1G076160.18 HORVU4Hr1G076160.18 |
Low | No | 1122 | OG0001423 | Get ORF Coding potential... Type: noncoding Potential: -0.812 Folding energies... MFEI: -26.397 AMFE: -0.609 GC content %: 43.316 | |
| Hvulgare_HORVU4Hr1G076160.19 HORVU4Hr1G076160.19 |
Low | No | 830 | OG0001423 | Get ORF Coding potential... Type: noncoding Potential: -0.812 Folding energies... MFEI: -27.831 AMFE: -0.611 GC content %: 45.542 | |
| Hvulgare_HORVU4Hr1G076160.2 HORVU4Hr1G076160.2 |
Low | No | 1512 | OG0001423 | Get ORF Coding potential... Type: noncoding Potential: -0.836 Folding energies... MFEI: -26.347 AMFE: -0.621 GC content %: 42.460 | |
| Hvulgare_HORVU4Hr1G076160.5 HORVU4Hr1G076160.5 |
Low | No | 1184 | OG0001423 | Get ORF Coding potential... Type: noncoding Potential: -0.804 Folding energies... MFEI: -27.973 AMFE: -0.625 GC content %: 44.764 | |
| Hvulgare_HORVU4Hr1G076160.9 HORVU4Hr1G076160.9 |
Low | No | 2019 | OG0043950 | Get ORF Coding potential... Type: noncoding Potential: -0.873 Folding energies... MFEI: -27.553 AMFE: -0.634 GC content %: 43.487 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G076160.5 | SwissProt | 2021-04-01 | O34376 | 1.56e-4 |
| Hvulgare_HORVU4Hr1G076160.5 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Hvulgare_HORVU4Hr1G076160.9 | SwissProt | 2021-04-01 | O34376 | 3.22e-4 |
| Hvulgare_HORVU4Hr1G076160.1 | SwissProt | 2021-04-01 | O34376 | 3.87e-4 |
| Hvulgare_HORVU4Hr1G076160.9 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1; RC/Helitron | |
| Hvulgare_HORVU4Hr1G076160.1 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1; RC/Helitron | |
| Hvulgare_HORVU4Hr1G076160.18 | SwissProt | 2021-04-01 | O34376 | 1.72e-4 |
| Hvulgare_HORVU4Hr1G076160.18 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Hvulgare_HORVU4Hr1G076160.19 | SwissProt | 2021-04-01 | O34376 | 8.67e-5 |
| Hvulgare_HORVU4Hr1G076160.19 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
