Hvulgare HORVU4Hr1G080030
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G080030 [ HORVU4Hr1G080030] |
chr4H | 613805852 | 613807701 | r1 | Hordeum vulgare (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G080030.1 HORVU4Hr1G080030.1 |
High | No | 1055 | OG0044006 | Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -33.659 AMFE: -0.709 GC content %: 47.488 | |
| Hvulgare_HORVU4Hr1G080030.2 HORVU4Hr1G080030.2 |
High | No | 485 | OG0003306 | Get ORF Coding potential... Type: noncoding Potential: -0.885 Folding energies... MFEI: -46.309 AMFE: -0.674 GC content %: 68.660 | |
| Hvulgare_HORVU4Hr1G080030.3 HORVU4Hr1G080030.3 |
High | No | 591 | OG0003306 | Get ORF Coding potential... Type: noncoding Potential: -0.793 Folding energies... MFEI: -49.306 AMFE: -0.700 GC content %: 70.389 | |
| Hvulgare_HORVU4Hr1G080030.4 HORVU4Hr1G080030.4 |
High | No | 438 | OG0044007 | Get ORF Coding potential... Type: noncoding Potential: -0.877 Folding energies... MFEI: -30.616 AMFE: -0.599 GC content %: 51.142 | |
| Hvulgare_HORVU4Hr1G080030.5 HORVU4Hr1G080030.5 |
High | No | 479 | OG0003306 | Get ORF Coding potential... Type: noncoding Potential: -0.798 Folding energies... MFEI: -54.405 AMFE: -0.726 GC content %: 74.948 | |
| Hvulgare_HORVU4Hr1G080030.6 HORVU4Hr1G080030.6 |
High | No | 632 | OG0003306 | Get ORF Coding potential... Type: noncoding Potential: -0.631 Folding energies... MFEI: -46.361 AMFE: -0.694 GC content %: 66.772 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
