Hvulgare HORVU4Hr1G085310
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G085310 [ HORVU4Hr1G085310] |
chr4H | 631485732 | 631490073 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU4Hr1G085310.11 HORVU4Hr1G085310.11 |
High | No | 2526 | OG0044116 | Get ORF Coding potential... Type: noncoding Potential: -0.886 Folding energies... MFEI: -29.256 AMFE: -0.665 GC content %: 44.022 | |
| Hvulgare_HORVU4Hr1G085310.15 HORVU4Hr1G085310.15 |
High | No | 2101 | OG0044117 | Get ORF Coding potential... Type: noncoding Potential: -1.140 Folding energies... MFEI: -26.949 AMFE: -0.658 GC content %: 40.933 | |
| Hvulgare_HORVU4Hr1G085310.4 HORVU4Hr1G085310.4 |
High | No | 2942 | OG0044118 | Get ORF Coding potential... Type: noncoding Potential: -0.753 Folding energies... MFEI: -28.433 AMFE: -0.675 GC content %: 42.148 | |
| Hvulgare_HORVU4Hr1G085310.5 HORVU4Hr1G085310.5 |
High | No | 2934 | OG0044119 | Get ORF Coding potential... Type: noncoding Potential: -0.753 Folding energies... MFEI: -28.923 AMFE: -0.685 GC content %: 42.229 | |
| Hvulgare_HORVU4Hr1G085310.6 HORVU4Hr1G085310.6 |
High | No | 1390 | OG0044120 | Get ORF Coding potential... Type: noncoding Potential: -0.954 Folding energies... MFEI: -24.273 AMFE: -0.631 GC content %: 38.489 | |
| Hvulgare_HORVU4Hr1G085310.7 HORVU4Hr1G085310.7 |
High | No | 1441 | OG0044121 | Get ORF Coding potential... Type: noncoding Potential: -0.790 Folding energies... MFEI: -26.287 AMFE: -0.651 GC content %: 40.389 | |
| Hvulgare_HORVU4Hr1G085310.9 HORVU4Hr1G085310.9 |
High | No | 2318 | OG0044122 | Get ORF Coding potential... Type: noncoding Potential: -0.653 Folding energies... MFEI: -28.986 AMFE: -0.655 GC content %: 44.262 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
