Hvulgare HORVU5Hr1G001410
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU5Hr1G001410 [ HORVU5Hr1G001410] |
chr5H | 4184837 | 4187656 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU5Hr1G001410.10 HORVU5Hr1G001410.10 |
High | No | 797 | OG0044246 | Get ORF Coding potential... Type: noncoding Potential: -0.254 Folding energies... MFEI: -32.346 AMFE: -0.643 GC content %: 50.314 | |
| Hvulgare_HORVU5Hr1G001410.11 HORVU5Hr1G001410.11 |
High | No | 871 | OG0044247 | Get ORF Coding potential... Type: noncoding Potential: -0.406 Folding energies... MFEI: -35.775 AMFE: -0.637 GC content %: 56.142 | |
| Hvulgare_HORVU5Hr1G001410.17 HORVU5Hr1G001410.17 |
High | No | 274 | OG0044248 | Get ORF Coding potential... Type: noncoding Potential: -1.067 Folding energies... MFEI: -38.102 AMFE: -0.674 GC content %: 56.569 | |
| Hvulgare_HORVU5Hr1G001410.18 HORVU5Hr1G001410.18 |
High | No | 566 | OG0044249 | Get ORF Coding potential... Type: noncoding Potential: -1.101 Folding energies... MFEI: -33.887 AMFE: -0.521 GC content %: 65.018 | |
| Hvulgare_HORVU5Hr1G001410.3 HORVU5Hr1G001410.3 |
High | No | 1096 | OG0044250 | Get ORF Coding potential... Type: noncoding Potential: -0.416 Folding energies... MFEI: -36.779 AMFE: -0.651 GC content %: 56.478 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
