GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Hvulgare_HORVU5Hr1G012550 [ HORVU5Hr1G012550]	chr5H	36875062	36879185	r1	Hordeum vulgare (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Hvulgare_HORVU5Hr1G012550.2 HORVU5Hr1G012550.2	High	No	531	OG0044395		Get ORF Coding potential... Type: noncoding Potential: -0.725 Folding energies... MFEI: -31.224 AMFE: -0.580 GC content %: 53.861
Hvulgare_HORVU5Hr1G012550.3 HORVU5Hr1G012550.3	High	No	422	OG0044396		Get ORF Coding potential... Type: noncoding Potential: -0.766 Folding energies... MFEI: -25.545 AMFE: -0.599 GC content %: 42.654
Hvulgare_HORVU5Hr1G012550.4 HORVU5Hr1G012550.4	High	No	518	OG0044397		Get ORF Coding potential... Type: noncoding Potential: -1.209 Folding energies... MFEI: -23.456 AMFE: -0.679 GC content %: 34.556

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).