Hvulgare HORVU5Hr1G014790
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU5Hr1G014790 [ HORVU5Hr1G014790] |
chr5H | 54852866 | 54856461 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU5Hr1G014790.16 HORVU5Hr1G014790.16 |
Low | No | 2216 | OG0044431 | Get ORF Coding potential... Type: noncoding Potential: -0.083 Folding energies... MFEI: -33.069 AMFE: -0.683 GC content %: 48.421 | |
| Hvulgare_HORVU5Hr1G014790.2 HORVU5Hr1G014790.2 |
Low | No | 1973 | OG0044432 | Get ORF Coding potential... Type: noncoding Potential: 0.000 Folding energies... MFEI: -33.599 AMFE: -0.679 GC content %: 49.518 | |
| Hvulgare_HORVU5Hr1G014790.24 HORVU5Hr1G014790.24 |
Low | No | 2049 | OG0044433 | Get ORF Coding potential... Type: noncoding Potential: -0.105 Folding energies... MFEI: -33.065 AMFE: -0.683 GC content %: 48.414 | |
| Hvulgare_HORVU5Hr1G014790.27 HORVU5Hr1G014790.27 |
Low | No | 749 | OG0044434 | Get ORF Coding potential... Type: noncoding Potential: -0.067 Folding energies... MFEI: -28.371 AMFE: -0.679 GC content %: 41.789 | |
| Hvulgare_HORVU5Hr1G014790.28 HORVU5Hr1G014790.28 |
Low | No | 1209 | OG0044435 | Get ORF Coding potential... Type: noncoding Potential: -0.157 Folding energies... MFEI: -26.336 AMFE: -0.675 GC content %: 39.041 | |
| Hvulgare_HORVU5Hr1G014790.31 HORVU5Hr1G014790.31 |
Low | No | 1081 | OG0044436 | Get ORF Coding potential... Type: noncoding Potential: -0.204 Folding energies... MFEI: -27.003 AMFE: -0.690 GC content %: 39.130 | |
| Hvulgare_HORVU5Hr1G014790.32 HORVU5Hr1G014790.32 |
High | No | 624 | OG0044437 | Get ORF Coding potential... Type: noncoding Potential: -1.036 Folding energies... MFEI: -22.596 AMFE: -0.653 GC content %: 34.615 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU5Hr1G014790.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Hvulgare_HORVU5Hr1G014790.24 | SwissProt | 2021-04-01 | Q7MG04 | 2.34e-17 |
| Hvulgare_HORVU5Hr1G014790.24 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; DNA/PIF-Harbinger | |
| Hvulgare_HORVU5Hr1G014790.27 | SwissProt | 2021-04-01 | Q8D4H3 | 2.27e-18 |
| Hvulgare_HORVU5Hr1G014790.27 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Hvulgare_HORVU5Hr1G014790.28 | SwissProt | 2021-04-01 | Q8D4H3 | 1.21e-17 |
| Hvulgare_HORVU5Hr1G014790.28 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Hvulgare_HORVU5Hr1G014790.31 | SwissProt | 2021-04-01 | Q8D4H3 | 1.33e-17 |
| Hvulgare_HORVU5Hr1G014790.16 | SwissProt | 2021-04-01 | Q7MG04 | 1.24e-10 |
| Hvulgare_HORVU5Hr1G014790.31 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
