Hvulgare HORVU5Hr1G019170
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU5Hr1G019170 [ HORVU5Hr1G019170] |
chr5H | 82540148 | 82544027 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU5Hr1G019170.1 HORVU5Hr1G019170.1 |
Low | No | 947 | OG0044541 | Get ORF Coding potential... Type: noncoding Potential: -0.813 Folding energies... MFEI: -36.030 AMFE: -0.654 GC content %: 55.121 | |
| Hvulgare_HORVU5Hr1G019170.10 HORVU5Hr1G019170.10 |
Low | No | 1391 | OG0003311 | Get ORF Coding potential... Type: noncoding Potential: -0.672 Folding energies... MFEI: -32.717 AMFE: -0.663 GC content %: 49.317 | |
| Hvulgare_HORVU5Hr1G019170.11 HORVU5Hr1G019170.11 |
Low | No | 1602 | OG0044542 | Get ORF Coding potential... Type: noncoding Potential: -0.465 Folding energies... MFEI: -20.119 AMFE: -0.607 GC content %: 33.146 | |
| Hvulgare_HORVU5Hr1G019170.3 HORVU5Hr1G019170.3 |
Low | No | 2746 | OG0044543 | Get ORF Coding potential... Type: noncoding Potential: -1.031 Folding energies... MFEI: -25.488 AMFE: -0.639 GC content %: 39.913 | |
| Hvulgare_HORVU5Hr1G019170.5 HORVU5Hr1G019170.5 |
Low | No | 1084 | OG0044544 | Get ORF Coding potential... Type: noncoding Potential: -0.919 Folding energies... MFEI: -33.090 AMFE: -0.644 GC content %: 51.384 | |
| Hvulgare_HORVU5Hr1G019170.6 HORVU5Hr1G019170.6 |
Low | No | 1238 | OG0044545 | Get ORF Coding potential... Type: noncoding Potential: -0.882 Folding energies... MFEI: -33.611 AMFE: -0.656 GC content %: 51.212 | |
| Hvulgare_HORVU5Hr1G019170.7 HORVU5Hr1G019170.7 |
Low | No | 1464 | OG0003311 | Get ORF Coding potential... Type: noncoding Potential: -0.684 Folding energies... MFEI: -32.370 AMFE: -0.662 GC content %: 48.907 | |
| Hvulgare_HORVU5Hr1G019170.8 HORVU5Hr1G019170.8 |
Low | No | 1455 | OG0003311 | Get ORF Coding potential... Type: noncoding Potential: -0.683 Folding energies... MFEI: -32.529 AMFE: -0.664 GC content %: 49.003 | |
| Hvulgare_HORVU5Hr1G019170.9 HORVU5Hr1G019170.9 |
Low | No | 1382 | OG0003311 | Get ORF Coding potential... Type: noncoding Potential: -0.670 Folding energies... MFEI: -32.605 AMFE: -0.660 GC content %: 49.421 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU5Hr1G019170.8 | SwissProt | 2021-04-01 | P85107 | 3.03e-9 |
| Hvulgare_HORVU5Hr1G019170.11 | SwissProt | 2021-04-01 | P29195 | 2.08e-14 |
| Hvulgare_HORVU5Hr1G019170.9 | SwissProt | 2021-04-01 | P85107 | 2.72e-9 |
| Hvulgare_HORVU5Hr1G019170.3 | SwissProt | 2021-04-01 | P85107 | 2.78e-8 |
| Hvulgare_HORVU5Hr1G019170.5 | SwissProt | 2021-04-01 | P85107 | 1.43e-9 |
| Hvulgare_HORVU5Hr1G019170.6 | SwissProt | 2021-04-01 | P85107 | 5.17e-9 |
| Hvulgare_HORVU5Hr1G019170.1 | SwissProt | 2021-04-01 | P85107 | 3.51e-9 |
| Hvulgare_HORVU5Hr1G019170.7 | SwissProt | 2021-04-01 | P85107 | 1.11e-8 |
| Hvulgare_HORVU5Hr1G019170.10 | SwissProt | 2021-04-01 | P85107 | 1.0e-8 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
