Hvulgare HORVU5Hr1G020200
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU5Hr1G020200 [ HORVU5Hr1G020200] |
chr5H | 91543318 | 91635451 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU5Hr1G020200.1 HORVU5Hr1G020200.1 |
Low | No | 348 | OG0044563 | Get ORF Coding potential... Type: noncoding Potential: -1.197 Folding energies... MFEI: -32.385 AMFE: -0.616 GC content %: 52.586 | |
| Hvulgare_HORVU5Hr1G020200.11 HORVU5Hr1G020200.11 |
Low | No | 435 | OG0044564 | Get ORF Coding potential... Type: noncoding Potential: -0.924 Folding energies... MFEI: -20.782 AMFE: -0.591 GC content %: 35.172 | |
| Hvulgare_HORVU5Hr1G020200.12 HORVU5Hr1G020200.12 |
Low | No | 1675 | OG0044565 | Get ORF Coding potential... Type: noncoding Potential: -1.149 Folding energies... MFEI: -30.454 AMFE: -0.663 GC content %: 45.910 | |
| Hvulgare_HORVU5Hr1G020200.14 HORVU5Hr1G020200.14 |
Low | No | 1219 | OG0044566 | Get ORF Coding potential... Type: noncoding Potential: -1.118 Folding energies... MFEI: -32.699 AMFE: -0.664 GC content %: 49.221 | |
| Hvulgare_HORVU5Hr1G020200.2 HORVU5Hr1G020200.2 |
High | No | 657 | OG0044567 | Get ORF Coding potential... Type: noncoding Potential: -1.257 Folding energies... MFEI: -30.015 AMFE: -0.640 GC content %: 46.880 | |
| Hvulgare_HORVU5Hr1G020200.3 HORVU5Hr1G020200.3 |
Low | No | 348 | OG0044568 | Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -32.241 AMFE: -0.616 GC content %: 52.299 | |
| Hvulgare_HORVU5Hr1G020200.32 HORVU5Hr1G020200.32 |
Low | No | 1179 | OG0044569 | Get ORF Coding potential... Type: noncoding Potential: -0.889 Folding energies... MFEI: -28.176 AMFE: -0.644 GC content %: 43.766 | |
| Hvulgare_HORVU5Hr1G020200.5 HORVU5Hr1G020200.5 |
Low | No | 393 | OG0005922 | Get ORF Coding potential... Type: noncoding Potential: -0.990 Folding energies... MFEI: -30.687 AMFE: -0.612 GC content %: 50.127 | |
| Hvulgare_HORVU5Hr1G020200.6 HORVU5Hr1G020200.6 |
Low | No | 289 | OG0005922 | Get ORF Coding potential... Type: noncoding Potential: -1.084 Folding energies... MFEI: -30.761 AMFE: -0.577 GC content %: 53.287 | |
| Hvulgare_HORVU5Hr1G020200.7 HORVU5Hr1G020200.7 |
Low | No | 279 | OG0005922 | Get ORF Coding potential... Type: noncoding Potential: -0.913 Folding energies... MFEI: -29.606 AMFE: -0.558 GC content %: 53.047 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU5Hr1G020200.7 | SwissProt | 2021-04-01 | Q9ASP6 | 1.78e-9 |
| Hvulgare_HORVU5Hr1G020200.1 | SwissProt | 2021-04-01 | Q9ASP6 | 7.38e-7 |
| Hvulgare_HORVU5Hr1G020200.11 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-Chapaev | |
| Hvulgare_HORVU5Hr1G020200.11 | SwissProt | 2021-04-01 | P31209 | 6.67e-5 |
| Hvulgare_HORVU5Hr1G020200.12 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Hvulgare_HORVU5Hr1G020200.3 | SwissProt | 2021-04-01 | Q61701 | 3.3e-8 |
| Hvulgare_HORVU5Hr1G020200.14 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Hvulgare_HORVU5Hr1G020200.5 | SwissProt | 2021-04-01 | Q66H68 | 2.85e-9 |
| Hvulgare_HORVU5Hr1G020200.32 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Hvulgare_HORVU5Hr1G020200.6 | SwissProt | 2021-04-01 | Q9ASP6 | 1.43e-9 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
